Browse Element(s) Details


Os.16480.1.S1_at

Description gb:AK073527.1
DB_XREF= gi:32983550
TID=Os.16480.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046M02, full insert sequence.
FL= gb:AK073527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3954011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39500OsAffx.2916.1.S1_at11/112+23834221..23834586hypothetical protein
LOC_Os02g39510OsAffx.12415.1.S1_at11/112+23839940..23840735hypothetical protein
LOC_Os02g39520Os.49903.1.S2_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39520Os.49903.1.S1_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39530Os.6744.1.S1_at11/112+23850009..23852622expressed protein
LOC_Os02g39530Os.49433.1.S1_x_at1/112+23850009..23852622expressed protein
LOC_Os02g39540Os.16480.1.S1_at11/112+23853970..23858723transposon protein, putative, unclassified, expressed
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16480.1.S1_at--208--1491Chr02:23857951..23858059 (25 bp)
AGCAGATGTTCCAGGTACCCCAGCA
LOC_Os02g39540
Os.16480.1.S1_at--545--2311Chr02:23858098..23858122 (25 bp)
AAAGGAAGCGGCCTCGTGCCCAGAA
LOC_Os02g39540
Os.16480.1.S1_at--836--5491Chr02:23858139..23858163 (25 bp)
GAACAGTCAAATGGAACCCCGGCAA
LOC_Os02g39540
Os.16480.1.S1_at--124--5491Chr02:23858378..23858402 (25 bp)
GAACTTCAAACGGATGCTAGCACTA
LOC_Os02g39540
Os.16480.1.S1_at--753--3031Chr02:23858417..23858441 (25 bp)
AATCCATCTTGGCTGTGATCTGAAG
LOC_Os02g39540
Os.16480.1.S1_at--186--7411Chr02:23858431..23858455 (25 bp)
GTGATCTGAAGCCTTTGTGCTGCAG
LOC_Os02g39540
Os.16480.1.S1_at--844--1651Chr02:23858478..23858502 (25 bp)
AGCGCCATTCTTCATTTGGATCATC
LOC_Os02g39540
Os.16480.1.S1_at--391--211Chr02:23858528..23858552 (25 bp)
ATAGCCTTCACCTCATTTGACTTTA
LOC_Os02g39540
Os.16480.1.S1_at--267--6591Chr02:23858556..23858580 (25 bp)
GATTCCAGCAACATTAGCCGATAAT
LOC_Os02g39540
Os.16480.1.S1_at--36--7551Chr02:23858587..23858611 (25 bp)
GTGGCTCTGCCATGATATACAAGTT
LOC_Os02g39540
Os.16480.1.S1_at--926--6191Chr02:23858699..23858723 (25 bp)
GAGGCTTAAAGACTCCCTTAGCATC
LOC_Os02g39540
Target Sequence 
AGCAGATGTTCCAGGTACCCCAGCAGCCAAATGGAACCATGCCAGATACTTCAGCAAATGGAAAAAGGAAGCGGCCTCGT
GCCCAGAAGCCAACAGAGGCATCTGAACAGTCAAATGGAACCCCGGCAACAGGACCCACATCTGGGTAGATTGAACNAGT
TTNCTCATNTTAGTCAGAACTCAGAACAGGTCTTTGTAAATATGCAGAGGAAGTGAAGAGTTGCCTAGAGAACTTCAAAC
GGATGCTAGCACTAACAAAAGTACATCAAATCCATCTTGGCTGTGATCTGAAGCCTTTGTGCTGCAGAGATTGAGCACGG
CCAAGCCCAAGCGCCATTCTTCATTTGGATCATCCTGGAGTGAAGTCCAGGGTTGAAAAATAGCCTTCACCTCATTTGAC
TTTAGTTGATTCCAGCAACATTAGCCGATAATGTTTTTGTGGCTCTGCCATGATATACAAGTTCTGAAATCNCGCTGTCG
TTTCCANTGGTNAATATGTAAATGATTTTTTGATGGACTAACCTGGTCATTTGACTGGATTTTTTTAGTTCGGAGGCTTA
AAGACTCCCTTAGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis