Browse Element(s) Details


Os.15749.1.S2_at

Description gb:AK100424.1
DB_XREF= gi:32985633
TID=Os.15749.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088B16, full insert sequence.
FL= gb:AK100424.1 gb:AK120177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3955011/11calcium-binding mitochondrial protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39510OsAffx.12415.1.S1_at11/112+23839940..23840735hypothetical protein
LOC_Os02g39520Os.49903.1.S2_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39520Os.49903.1.S1_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39530Os.6744.1.S1_at11/112+23850009..23852622expressed protein
LOC_Os02g39530Os.49433.1.S1_x_at1/112+23850009..23852622expressed protein
LOC_Os02g39540Os.16480.1.S1_at11/112+23853970..23858723transposon protein, putative, unclassified, expressed
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15749.1.S2_at--326--1551Chr02:23861199..23861223 (25 bp)
AGCTTGTCAGCAACCTCTCTAAAGA
LOC_Os02g39550
Os.15749.1.S2_at--282--3031Chr02:23860980..23861004 (25 bp)
AATGCGTCTGGAAGCTTTTTGGCCT
LOC_Os02g39550
Os.15749.1.S2_at--423--9971Chr02:23860944..23860968 (25 bp)
TACCGTATCATTTCAGTCGAGGCGA
LOC_Os02g39550
Os.15749.1.S2_at--422--4591Chr02:23860923..23860947 (25 bp)
GCGAAACCTTTCTAGTATCTCAGCT
LOC_Os02g39550
Os.15749.1.S2_at--691--2051Chr02:23860898..23860922 (25 bp)
ACTTCATGGCTGTGTCGTGTGTAAA
LOC_Os02g39550
Os.15749.1.S2_at--666--2671Chr02:23860869..23860893 (25 bp)
AAGCGACGCGGCCATTTTTTGTGCA
LOC_Os02g39550
Os.15749.1.S2_at--1075--10231Chr02:23860852..23860876 (25 bp)
TTTGTGCATCTCTTCTCTGAGCAGA
LOC_Os02g39550
Os.15749.1.S2_at--820--5131Chr02:23860824..23860848 (25 bp)
GCAAACTTTGATCAGTGGCCCGTGA
LOC_Os02g39550
Os.15749.1.S2_at--76--9671Chr02:23860750..23860774 (25 bp)
TCAGCGCTCTAGATCGGCAGGTAAA
LOC_Os02g39550
Os.15749.1.S2_at--444--10851Chr02:23860679..23860703 (25 bp)
TTGGCTGGATTTGGATGCTACCCTC
LOC_Os02g39550
Os.15749.1.S2_at--91--10051Chr02:23860640..23860664 (25 bp)
TAGATCTATTTTGAACCCCTGAGTA
LOC_Os02g39550
Target Sequence 
AGCTTGTCAGCAACCTCTCTAAAGACAAAGATGGGAAGATCCGTGTGGAAGACATTGTGAAGCTGGCATCACAAACAGAT
GAAAACAATGAAGATGAGGAAGAAGGACGGCAGTAGATGGAAATGCGTCTGGAAGCTTTTTGGCCTGTTGAGATNGATAC
CGTATCATTTCAGTCGAGGCGAAACCTTTCTAGTATCTCAGCTACTTCATGGCTGTGTCGTGTGTAAATCNAAAGCGACG
CGGCCATTTTTTGTGCATCTCTTCTCTGAGCAGAGTAGCAAACTTTGATCAGTGGCCCGTGATTTGCCAGGGAAGCTTGC
TGTAAAGATGTGGACTTTCATATNGTTAGGCTCAGCGCTCTAGATCGGCAGGTAAATTGCAACCGAAATTTCAACTGGTT
GCTGTGGAAGTGGAAATACGGATTGGCTGGATTTGGATGCTACCCTCTAGTCACCATATTTTAGATCTATTTTGAACCCC
TGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15749.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis