Browse Element(s) Details


Os.14567.1.S1_at

Description gb:AK058418.1
DB_XREF= gi:32968436
TID=Os.14567.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D05, full insert sequence.
FL= gb:AK058418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3957011/11acetolactate synthase small subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39540Os.16480.1.S1_at11/112+23853970..23858723transposon protein, putative, unclassified, expressed
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14567.1.S1_at--91--7371Chr02:23883578..23883602 (25 bp)
GTGAACACTGCTGCTCGGAGAGACA
LOC_Os02g39570
Os.14567.1.S1_at--320--3051Chr02:23883619..23883643 (25 bp)
AATCTTCCGGGCAAAATCTGTTGAT
LOC_Os02g39570
Os.14567.1.S1_at--1140--3011Chr02:23884511..23884535 (25 bp)
AATCCGGTGTCGATTCCAAGTACCT
LOC_Os02g39570
Os.14567.1.S1_at--1030--10291Chr02:23884549..23884573 (25 bp)
TTTCCGTTGTAATCCCAGGTCTTGT
LOC_Os02g39570
Os.14567.1.S1_at--911--3011Chr02:23884595..23884619 (25 bp)
AATGCTTGGTCGGTTGGTTGCTACC
LOC_Os02g39570
Os.14567.1.S1_at--959--10791Chr02:23884648..23884672 (25 bp)
TTGTAGTCAGATTCCGTTCGTTCAG
LOC_Os02g39570
Os.14567.1.S1_at--902--1731Chr02:23884713..23884737 (25 bp)
ACCTTCCTCTCTGTAATGTGCCAAT
LOC_Os02g39570
Os.14567.1.S1_at--174--3051Chr02:23884735..23884759 (25 bp)
AATCCGCTGGCTTCTTGTCCAGTAA
LOC_Os02g39570
Os.14567.1.S1_at--1017--6651Chr02:23884776..23884800 (25 bp)
GTTGAGCCTATGTTTTCTACTGACA
LOC_Os02g39570
Os.14567.1.S1_at--708--9671Chr02:23884819..23884843 (25 bp)
TCAGCCACTTACCATGTTCTGGAAT
LOC_Os02g39570
Os.14567.1.S1_at--36--2431Chr02:23884845..23884869 (25 bp)
AAAATTGAATCCAGCGCTTTGCACC
LOC_Os02g39570
Target Sequence 
GTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACAC
TGTTACGTTACAGCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTTATGGCATCTGTGAGG
TCGCCAGAACAGGGCGAGTGGCGCTGGTCCGCGAATCCGGTGTCGATTCCAAGTACCTTCGTGGCTACTCCTTTCCGTTG
TAATCCCAGGTCTTGTGAGAAGAAAGGACAGTAATAAAATGCTTGGTCGGTTGGTTGCTACCTGTTACAGCAGAGTGTTG
TAGTAGAGTGTTGTAGTCAGATTCCGTTCGTTCAGTTATGTTGTTTGTTATGATGCTGTTCTTTTGTTGTTGTTTACCTT
CCTCTCTGTAATGTGCCAATCCGCTGGCTTCTTGTCCAGTAAAGATCATGATGCAAGAGTTGAGCCTATGTTTTCTACTG
ACAGGCAAACCAAACGTGCACTCAGCCACTTACCATGTTCTGGAATAAAAATTGAATCCAGCGCTTTGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis