Browse Element(s) Details


Os.51273.1.S1_at

Description gb:AK062391.1
DB_XREF= gi:32972409
TID=Os.51273.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-C11, full insert sequence.
FL= gb:AK062391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3961011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51273.1.S1_at--258--8991Chr02:23895000..23895024 (25 bp)
TGAAGACGACGCTGCAAATCGCCGT
LOC_Os02g39610
Os.51273.1.S1_at--669--4491Chr02:23894980..23895004 (25 bp)
GCCGTCTCCGTGTGCTTAATTACGA
LOC_Os02g39610
Os.51273.1.S1_at--912--6391Chr02:23894920..23894944 (25 bp)
GATCGTCAGCAATTCCGTGTTTATG
LOC_Os02g39610
Os.51273.1.S1_at--86--6991Chr02:23894862..23894886 (25 bp)
GTACCTGGTATGACGATCAGTTCCA
LOC_Os02g39610
Os.51273.1.S1_at--1077--5572Chr07:24531341..24531382 (25 bp)
GAAATGGCGATCTTCCACACAAGAT
NONE
Os.51273.1.S1_at--172--2791Chr02:23894790..23894814 (25 bp)
AAGAGTACGTTCGATGCCCTGGATA
LOC_Os02g39610
Os.51273.1.S1_at--1031--7011Chr02:23894758..23894782 (25 bp)
GTACATGGTAAATCTTTCCCTCGGC
LOC_Os02g39610
Os.51273.1.S1_at--713--10651Chr02:23894743..23894767 (25 bp)
TTCCCTCGGCCAATAATAACGCTGT
LOC_Os02g39610
Os.51273.1.S1_at--786--2591Chr02:23894702..23894726 (25 bp)
AACCCCGGAGACTGATCGAGACAAA
LOC_Os02g39610
Os.51273.1.S1_at--484--5951Chr02:23894672..23894696 (25 bp)
GAGCACAGCGGCACATTGTGTTCAT
LOC_Os02g39610
Os.51273.1.S1_at--60--531Chr02:23894637..23894661 (25 bp)
ATCGACAATACATTTTCACCCTGAA
LOC_Os02g39610
Target Sequence 
TGAAGACGACGCTGCAAATCGCCGTCTCCGTGTGCTTAATTACGACAGGTTTGCAAGGAACAGCGGCTGTTGATGTTGCT
GATCGTCAGCAATTCCGTGTTTATGCGTGTCTGATTGCAGGAAAAATGAGTACTAGTAGTACCTGGTATGACGATCAGTT
CCAGGTCATCAGTAGAAATGGCGATCTTCCACACAAGATTTTTGTAGAGCAAGAGTACGTTCGATGCCCTGGATATGTTT
TAGTACATGGTAAATCTTTCCCTCGGCCAATAATAACGCTGTGGTATCACAAGTTCACAACCCCGGAGACTGATCGAGAC
AAAGCAAGGAGCACAGCGGCACATTGTGTTCATTTTTTGTTTCATCGACAATACATTTTCACCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis