Browse Element(s) Details


Os.5575.1.S1_s_at

Description gb:C98039
DB_XREF= gi:3760785
DB_XREF=C98039
CLONE=C0436_8Z
TID=Os.5575.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.5575 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3958011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5575.1.S1_s_at--409--9471Chr02:23886820..23886844 (25 bp)
TCTGTCCGCGAGATTGTTCGATCTG
LOC_Os02g39580
Os.5575.1.S1_s_at--149--1251Chr02:23886830..23886854 (25 bp)
AGATTGTTCGATCTGCCCCATACTT
LOC_Os02g39580
Os.5575.1.S1_s_at--165--4191Chr02:23886846..23886870 (25 bp)
CCCATACTTGGACCTCAACTGAAGT
LOC_Os02g39580
Os.5575.1.S1_s_at--1085--5331Chr02:23886866..23886890 (25 bp)
GAAGTTTTACTCTACAATGTATGCA
LOC_Os02g39580
Os.5575.1.S1_s_at--426--751Chr02:23886882..23886906 (25 bp)
ATGTATGCATTTCCTCTTGTTTCTG
LOC_Os02g39580
Os.5575.1.S1_s_at--368--9571Chr02:23886896..23886920 (25 bp)
TCTTGTTTCTGGCTAGAGCCGTCAT
LOC_Os02g39580
Os.5575.1.S1_s_at--508--5871Chr02:23886911..23886935 (25 bp)
GAGCCGTCATAAGCTTGTGCTTTCT
LOC_Os02g39580
Os.5575.1.S1_s_at--144--8831Chr02:23886953..23886977 (25 bp)
TGATATCATAATGCCGAATCCCGAA
LOC_Os02g39580
Os.5575.1.S1_s_at--749--5251Chr02:23886968..23886992 (25 bp)
GAATCCCGAATGTATATCCCAACTG
LOC_Os02g39580
Os.5575.1.S1_s_at--140--6891Chr02:23886979..23887003 (25 bp)
GTATATCCCAACTGCATGTGGTACA
LOC_Os02g39580
Os.5575.1.S1_s_at--1070--1971Chr02:23886989..23887013 (25 bp)
ACTGCATGTGGTACATTATCGGATA
LOC_Os02g39580
Target Sequence 
TCTGTCCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTT
GTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATG
TATATCCCAACTGCATGTGGTACATTATCGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5575.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis