Browse Element(s) Details


Os.10189.1.S1_at

Description gb:AK121756.1
DB_XREF= gi:37991379
TID=Os.10189.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088E11, full insert sequence.
FL= gb:AK121756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3918010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39140Os.49337.1.S1_at11/112+23637586..23645647bHLH transcription factor GBOF-1, putative, expressed
LOC_Os02g39140OsAffx.13489.1.S1_at1/112+23637586..23645647bHLH transcription factor GBOF-1, putative, expressed
LOC_Os02g39150OsAffx.24650.1.S1_s_at11/112+23646114..23647130hypothetical protein
LOC_Os02g39150OsAffx.24650.1.S1_x_at9/112+23646114..23647130hypothetical protein
LOC_Os02g39160Os.20084.1.S1_at11/112+23647436..236533054-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase family protein, expressed
LOC_Os02g39170OsAffx.24644.1.S1_at11/112+23656750..23658590GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39180Os.10189.1.S1_at10/112+23658882..23661264expressed protein
LOC_Os02g39190OsAffx.24646.1.S1_at11/112+23667975..23670671hypothetical protein
LOC_Os02g39200Os.21852.1.S1_at11/112+23671476..23676789nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g39210OsAffx.2913.1.S1_at11/112+23677452..23678525hypothetical protein
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10189.1.S1_at--715--3891Chr02:23659288..23659312 (25 bp)
CTGGAGAACAACATGGGCGACGTCG
LOC_Os02g39180
Os.10189.1.S1_at--214--4091Chr02:23659305..23659329 (25 bp)
CGACGTCGAGATGGTATCTGCGGAA
LOC_Os02g39180
Os.10189.1.S1_at--1141--451NONE
ATCTGCGGAAGGCTCTTCAGAAGCT
NONE
Os.10189.1.S1_at--1122--1431Chr02:23660771..23660795 (25 bp)
AGAAGCTGCAAAGGACAAGTCACAA
LOC_Os02g39180
Os.10189.1.S1_at--55--9031Chr02:23660995..23661019 (25 bp)
TGCAAAGCCGCCGACAAAGGACAAA
LOC_Os02g39180
Os.10189.1.S1_at--643--2811Chr02:23661018..23661042 (25 bp)
AAGTTGACGCCATGGTGGAGTGACT
LOC_Os02g39180
Os.10189.1.S1_at--390--7511Chr02:23661047..23661071 (25 bp)
GTGGTTGATAACACTCAGCTTCTAC
LOC_Os02g39180
Os.10189.1.S1_at--676--9531Chr02:23661067..23661091 (25 bp)
TCTACATTGTTGAAGGGATCCGCAA
LOC_Os02g39180
Os.10189.1.S1_at--1024--9971Chr02:23661102..23661126 (25 bp)
TACCATGAGCTATCAAAGCATCTTT
LOC_Os02g39180
Os.10189.1.S1_at--557--4971Chr02:23661119..23661143 (25 bp)
GCATCTTTACTGTCTTAATGTTTAG
LOC_Os02g39180
Os.10189.1.S1_at--914--10111Chr02:23661234..23661258 (25 bp)
TATGAAAGCCTGATTTGCATGGTTT
LOC_Os02g39180
Target Sequence 
CTGGAGAACAACATGGGCGACGTCGAGATGGTATCTGCGGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAA
GTTTAATGTGAAAAAGAACTCAAGAGTACAGATCANAAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAAG
CCGCCGACAAAGGACAAAGTTGACGCCATGGTGGAGTGACTGGATGTGGTTGATAACACTCAGCTTCTACATTGTTGAAG
GGATCCGCAAGGATTGAAAATACCATGAGCTATCAAAGCATCTTTACTGTCTTAATGTTTAGTACAAGCTAGTTAGCTTT
CTAATCAATGTATCCTACTAAATACGATGATCAAGACCTGAGAGGNTAAATGCATGGTTTTTGGAATATTTGTATGAAAG
CCTGATTTGCATGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis