Browse Element(s) Details


OsAffx.24649.4.S1_at

Description tigr:9630.m03773
TID=OsAffx.24649.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable G2mitotic-specific cyclin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3923011/11Cyclin, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39190OsAffx.24646.1.S1_at11/112+23667975..23670671hypothetical protein
LOC_Os02g39200Os.21852.1.S1_at11/112+23671476..23676789nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g39210OsAffx.2913.1.S1_at11/112+23677452..23678525hypothetical protein
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein
LOC_Os02g39260Os.55732.1.S1_at11/112+23705021..23706577Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g39270OsAffx.12407.1.S1_at11/112+23708748..23710071hypothetical protein
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24649.4.S1_at--652--2051Chr02:23694958..23694982 (25 bp)
ACTTCACAAGGTACTACGGCAAGGG
LOC_Os02g39230
OsAffx.24649.4.S1_at--753--1571Chr02:23695147..23695442 (25 bp)
AGCTCACGGGCTTTTGGTACTCTGA
LOC_Os02g39230
OsAffx.24649.4.S1_at--1134--8271Chr02:23695427..23695450 (24 bp)
GGCTTTTGGTACTCTGATGTCTCTA
LOC_Os02g39230
OsAffx.24649.4.S1_at--182--3871Chr02:23695439..23695463 (25 bp)
CTGATGTCTCTACATATGGCCCAAC
LOC_Os02g39230
OsAffx.24649.4.S1_at--764--2071Chr02:23695450..23695474 (25 bp)
ACATATGGCCCAACCGCGGACACGT
LOC_Os02g39230
OsAffx.24649.4.S1_at--866--10511Chr02:23695486..23695510 (25 bp)
TTCACCCGGTACAAGTGTACAACAG
LOC_Os02g39230
OsAffx.24649.4.S1_at--1039--1311Chr02:23695517..23695541 (25 bp)
AGAGGAAAAGCTACGGGTGCATGCA
LOC_Os02g39230
OsAffx.24649.4.S1_at--1006--5751Chr02:23695555..23695579 (25 bp)
GACGTTGCCGACCAGTCGCTAATGA
LOC_Os02g39230
OsAffx.24649.4.S1_at--642--7231Chr02:23695569..23695593 (25 bp)
GTCGCTAATGAACTACGTACGGCTG
LOC_Os02g39230
OsAffx.24649.4.S1_at--102--3691Chr02:23695573..23695597 (25 bp)
CTAATGAACTACGTACGGCTGCCCG
LOC_Os02g39230
OsAffx.24649.4.S1_at--322--8991Chr02:23695667..23695691 (25 bp)
TGAACCGGCACGACGCGCTGGTCTG
LOC_Os02g39230
Target Sequence 
ACTTCACAAGGTACTACGGCAAGGGGAAAGAAGAGAAGCTGATGAGGGAGGCGGCGCATTGGTTCGCCGACGGGTCGTTG
CTGACGTACGGGTTCCACCGCTACCTGCCGTCCATGGTGGCGGCGTCAGCGATCTTCCTGGCGAGGCTGCACGTGCGGGG
GCATGAGCCATGGAGAAAGGATCTCGCGGAGCTCACGGGCTTTTGGTACTCTGATGTCTCTACATATGGCCCAACCGCGG
ACACGTTCGTGGAGCACTTCACCCGGTACAAGTGTACAACAGCCGGGGAGAGGAAAAGCTACGGGTGCATGCAGCGGCTG
GAGCGCGACGTTGCCGACCAGTCGCTAATGAACTACGTACGGCTGCCCGGGGCTACTATACCTGCCGTCCATGGAGGCGG
CGGCCGGCGGGCGTCGATCTCCGTCGCGAGGTGTTCGCTGAACCGGCACGACGCGCTGGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24649.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis