Browse Element(s) Details


Os.35443.1.S1_at

Description gb:AK067496.1
DB_XREF= gi:32977514
TID=Os.35443.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109L15, full insert sequence.
FL= gb:AK067496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3929011/11TRAF-type zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein
LOC_Os02g39260Os.55732.1.S1_at11/112+23705021..23706577Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g39270OsAffx.12407.1.S1_at11/112+23708748..23710071hypothetical protein
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed
LOC_Os02g39310NANA2+23732381..23732650hypothetical protein
LOC_Os02g39320OsAffx.2915.1.S1_at11/112+23735968..23737061hypothetical protein
LOC_Os02g39330Os.11894.1.S1_at10/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330OsAffx.15866.1.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330Os.36593.2.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39340Os.33200.1.S1_at11/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39340OsAffx.28210.1.S1_at1/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004659molecular_functionprenyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35443.1.S1_at--433--9791Chr02:23721486..23721510 (25 bp)
TAAGCATTGTTCAGAGCGCCTTCAA
LOC_Os02g39290
Os.35443.1.S1_at--869--4551Chr02:23721471..23721495 (25 bp)
GCGCCTTCAAATCCATCTGATGTAT
LOC_Os02g39290
Os.35443.1.S1_at--947--5231Chr02:23721402..23721426 (25 bp)
GAATCAACGATTACACCTCCTTGAG
LOC_Os02g39290
Os.35443.1.S1_at--556--4551Chr02:23720811..23720835 (25 bp)
GCCCAGTCACTGAATGAACTCTCTG
LOC_Os02g39290
Os.35443.1.S1_at--96--2871Chr02:23720657..23720681 (25 bp)
AAGTGTGAATACATCCTTCGGCCAT
LOC_Os02g39290
Os.35443.1.S1_at--1100--8431Chr02:23720638..23720662 (25 bp)
GGCCATCCCGGCTAAAAAGAAGTGT
LOC_Os02g39290
Os.35443.1.S1_at--1083--2331Chr02:23720577..23720601 (25 bp)
AAACCAGGGCGTCATACTTTAGTAG
LOC_Os02g39290
Os.35443.1.S1_at--8--151Chr02:23720540..23720564 (25 bp)
ATTAGCACCTCCTTACAGTTTACCA
LOC_Os02g39290
Os.35443.1.S1_at--260--3451Chr02:23720525..23720549 (25 bp)
CAGTTTACCATACTTCTGTGTGTTG
LOC_Os02g39290
Os.35443.1.S1_at--1048--1151Chr02:23720468..23720492 (25 bp)
AGTCAGCTTCTCTTGAATTCTTTTG
LOC_Os02g39290
Os.35443.1.S1_at--653--7431Chr02:23720427..23720451 (25 bp)
GTGTTTGATCTTTTCTGTATCATGC
LOC_Os02g39290
Target Sequence 
TAAGCATTGTTCAGAGCGCCTTCAAATCCATCTGATGTATATTCTTGANCTAACTACAAGACATGATGCTTTTGTTAATG
ATATGAATCAACGATTACACCTCCTTGAGAAGGCCCAGTCACTGAATGAACTCTCTGGGGCTTTAGATAACAGAACCCNT
CACTCTAACAGCAAAGGAGCAAGAAGCAAAGATCAAGAAACTCGAACAGGATCTCAAAGTGCAAGAGACAAAGCTGNAGA
AACTTGAAAGCGAGTTTAAGTCAGGGAAAGTGTGAATACATCCTTCGGCCATCCCGGCTAAAAAGAAGTGTGAATGCGTG
ATGTTGTGATTATAGTGTTACTGTAAAAAACCAGGGCGTCATACTTTAGTAGCTGTAAATAATAATTAGCACCTCCTTAC
AGTTTACCATACTTCTGTGTGTTGNTCATGTACGATAAGAAAATAAGGTTTAGAAAAGTCAGCTTCTCTTGAATTCTTTT
GTTAGTTTGAAGTAACAGTGTTTGATCTTTTCTGTATCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis