Browse Element(s) Details


OsAffx.12408.1.S1_at

Description tigr:9630.m03778
TID=OsAffx.12408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3928011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein
LOC_Os02g39260Os.55732.1.S1_at11/112+23705021..23706577Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g39270OsAffx.12407.1.S1_at11/112+23708748..23710071hypothetical protein
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed
LOC_Os02g39310NANA2+23732381..23732650hypothetical protein
LOC_Os02g39320OsAffx.2915.1.S1_at11/112+23735968..23737061hypothetical protein
LOC_Os02g39330Os.11894.1.S1_at10/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330OsAffx.15866.1.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330Os.36593.2.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39340Os.33200.1.S1_at11/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39340OsAffx.28210.1.S1_at1/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12408.1.S1_at--602--5391Chr02:23718526..23718550 (25 bp)
GAAGCAGCGATGTCATCTGTAGCAA
LOC_Os02g39280
OsAffx.12408.1.S1_at--674--2351Chr02:23718594..23718618 (25 bp)
AAAGCATTCCAACCTTTCATCAATG
LOC_Os02g39280
OsAffx.12408.1.S1_at--22--6731Chr02:23718624..23718644 (21 bp)
GTTCTTGTAGATGCAACCAGTCTTA
LOC_Os02g39280
OsAffx.12408.1.S1_at--883--10451Chr02:23718971..23718995 (25 bp)
TTAGCAAGTGGTACCCCTCAGATGA
LOC_Os02g39280
OsAffx.12408.1.S1_at--365--8231Chr02:23719003..23719027 (25 bp)
GGCAAGATCCGCGAAGTGATGTTCA
LOC_Os02g39280
OsAffx.12408.1.S1_at--1017--7391Chr02:23719018..23719042 (25 bp)
GTGATGTTCAGGTCTCTATGCCACA
LOC_Os02g39280
OsAffx.12408.1.S1_at--1073--7151Chr02:23719029..23719053 (25 bp)
GTCTCTATGCCACAGTCCTTTATGT
LOC_Os02g39280
OsAffx.12408.1.S1_at--227--2971Chr02:23719076..23719100 (25 bp)
AATGGCAACGTGCTTCTTTCTCAAA
LOC_Os02g39280
OsAffx.12408.1.S1_at--463--6691Chr02:23719241..23719264 (24 bp)
GTTCCATTTGGTTCTTACTTTGAGA
LOC_Os02g39280
OsAffx.12408.1.S1_at--64--6371Chr02:23719599..23719623 (25 bp)
GATCCACTGCAGGTGGCATCTAAGA
LOC_Os02g39280
OsAffx.12408.1.S1_at--212--5411Chr02:23720231..23720255 (25 bp)
GAAGCTGCCTGTGACTATGTCCTAA
LOC_Os02g39280
Target Sequence 
GAAGCAGCGATGTCATCTGTAGCAAAATAGATGACCTAAAGACAGCAGAAAGAAGCATTGAACAAGCAAAAGCATTCCAA
CCTTTCATCAATGAACATGTTCTTGTAGATGCAACCAGTCTTAGCAAGTGGTACCCCTCAGATGAGTATGGCGGCAAGAT
CCGCGAAGTGATGTTCAGGTCTCTATGCCACAGTCCTTTATGTCCCCCAGATACTGCAGTGACAGAATGGCAACGTGCTT
CTTTCTCAAAGAACAAAACAAATCTGATCTATGAGACAAAGCATCAGGCACATGATGTTCCATTTGGTTCTTACTTTGAG
ATCCACTGCAGGTGGCATCTAAGAACAACCTCCAGTTCAACATGTCAAGTTGATATAAAGATTGGAGTAAACATGAAGAA
ATGGTGCATTTTGCAATCCAAAATAAAGTCTGGAGCAACTGATGAGTACAGGAGAGAGGTTTGCAAGATTTTGGAAGCTG
CCTGTGACTATGTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis