Browse Element(s) Details


Os.33200.1.S1_at

Description gb:AK058232.1
DB_XREF= gi:32968250
TID=Os.33200.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-C02, full insert sequence.
FL= gb:AK060085.1 gb:AK058232.1 gb:AK101400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3934011/11glycine-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed
LOC_Os02g39310NANA2+23732381..23732650hypothetical protein
LOC_Os02g39320OsAffx.2915.1.S1_at11/112+23735968..23737061hypothetical protein
LOC_Os02g39330Os.11894.1.S1_at10/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330OsAffx.15866.1.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330Os.36593.2.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39340Os.33200.1.S1_at11/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39340OsAffx.28210.1.S1_at1/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39360Os.3397.1.S1_at11/112+23753345..23754688B-box zinc finger family protein, expressed
LOC_Os02g39370NANA2+23755253..23760009Met-10, expressed
LOC_Os02g39380NANA2+23760736..23761566EF hand family protein, expressed
LOC_Os02g39390Os.51717.1.S1_at11/112+23763526..23766924expressed protein
LOC_Os02g39390OsAffx.25781.1.S1_at1/112+23763526..23766924expressed protein
LOC_Os02g39400Os.27355.1.A1_at11/112+23767238..23769792isochorismatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33200.1.S1_at--313--7731Chr02:23742532..23742556 (25 bp)
GGTGGCAACAGCCTCAAAAGTTTGT
LOC_Os02g39340
Os.33200.1.S1_at--220--4231Chr02:23742594..23742618 (25 bp)
CCGCATGCGCAGGAGTCTTAGTTCA
LOC_Os02g39340
Os.33200.1.S1_at--992--10651Chr02:23742631..23742655 (25 bp)
TTCCTTTTTGGCCTTCTGAAGCACA
LOC_Os02g39340
Os.33200.1.S1_at--188--5931Chr02:23742669..23742693 (25 bp)
GAGCAGTACTGTTTTCATGGCTGGT
LOC_Os02g39340
Os.33200.1.S1_at--632--8211Chr02:23742704..23742728 (25 bp)
GGAATCTGGATAGCGTTCCTTGCCC
LOC_Os02g39340
Os.33200.1.S1_at--588--8791Chr02:23742741..23742765 (25 bp)
TGTTCTTCTTTGTTCGTTAATGCGT
LOC_Os02g39340
Os.33200.1.S1_at--287--231Chr02:23742836..23742860 (25 bp)
ATATATAAGCTAGCCGGCGTCTCAT
LOC_Os02g39340
Os.33200.1.S1_at--344--8371Chr02:23742851..23742875 (25 bp)
GGCGTCTCATGTCATATGCGGCAAA
LOC_Os02g39340
Os.33200.1.S1_at--484--9771Chr02:23742953..23742977 (25 bp)
TAATGGGTCACCCTTGACAACGTGG
LOC_Os02g39340
Os.33200.1.S1_at--164--6931Chr02:23743009..23743033 (25 bp)
GTAGTAAGTACCGAAGCGCTTCTTC
LOC_Os02g39340
Os.33200.1.S1_at--104--271Chr02:23743046..23743070 (25 bp)
ATATGAATTCTTGTCGCGTGTCGGA
LOC_Os02g39340
Target Sequence 
GGTGGCAACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTCTGCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTCT
TAGTTCAGGTGCTCCCTTGTTCCTTTTTGGCCTTCTGAAGCACATGGATGTGGCGATGAGCAGTACTGTTTTCATGGCTG
GTGCAATGACCTGGAATCTGGATAGCGTTCCTTGCCCGGGGCAGTGATTTGTTCTTCTTTGTTCGTTAATGCGTATTTTC
TACGTTTTGTTAAGCACTAACCAAGTGAGTAACTTCCTGGCAATTTTGTAGTTGATGAGATCGCATATATAAGCTAGCCG
GCGTCTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGAACCGGTNTAGCTTGGTTTCACTGCATTTTGGTTT
GGTTTCCTTAGCGTTGGAATGTAATGGGTCACCCTTGACAACGTGGCTNCAAATGTATAATCTTCAATGGAAAACGAGTA
GTAAGTACCGAAGCGCTTCTTCGCTGAACACAACATATGAATTCTTGTCGCGTGTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis