Browse Element(s) Details


Os.51717.1.S1_at

Description gb:AK063512.1
DB_XREF= gi:32973530
TID=Os.51717.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G03, full insert sequence.
FL= gb:AK063512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3939011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39340Os.33200.1.S1_at11/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39340OsAffx.28210.1.S1_at1/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39360Os.3397.1.S1_at11/112+23753345..23754688B-box zinc finger family protein, expressed
LOC_Os02g39370NANA2+23755253..23760009Met-10, expressed
LOC_Os02g39380NANA2+23760736..23761566EF hand family protein, expressed
LOC_Os02g39390Os.51717.1.S1_at11/112+23763526..23766924expressed protein
LOC_Os02g39390OsAffx.25781.1.S1_at1/112+23763526..23766924expressed protein
LOC_Os02g39400Os.27355.1.A1_at11/112+23767238..23769792isochorismatase family protein, expressed
LOC_Os02g39410Os.18058.1.S1_x_at11/112+23770410..23776429Protein phosphatase 2C containing protein, expressed
LOC_Os02g39420Os.55732.1.S1_at4/112+23778892..23780064Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_s_at11/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.2.S1_x_at4/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_x_at1/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39440NANA2+23785790..23786943retrotransposon protein, putative, unclassified
LOC_Os02g39450NANA2+23789800..23790681hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51717.1.S1_at--25--9631Chr02:23765212..23765235 (24 bp)
TCATGTGCTTTTTCCATCTGAGGTG
LOC_Os02g39390
Os.51717.1.S1_at--659--10091Chr02:23766293..23766314 (22 bp)
TAGGCGTCGCTCAAGTTCAGGTGAT
LOC_Os02g39390
Os.51717.1.S1_at--378--1591Chr02:23766446..23766470 (25 bp)
AGCTGGCTGAAGATCCTTTCACGGA
LOC_Os02g39390
Os.51717.1.S1_at--408--4931Chr02:23766477..23766501 (25 bp)
GCTTGACTACTACCCATTTCTTGAG
LOC_Os02g39390
Os.51717.1.S1_at--471--2451Chr02:23766502..23766526 (25 bp)
AACAATCCCGTTGAGTTTCAGCTGA
LOC_Os02g39390
Os.51717.1.S1_at--803--6011Chr02:23766525..23766549 (25 bp)
GAGAGATGAGCTACCACTCCTGGAG
LOC_Os02g39390
Os.51717.1.S1_at--383--8991Chr02:23766562..23766586 (25 bp)
TGAAGAATGCTAATCTGCCCCACTT
LOC_Os02g39390
Os.51717.1.S1_at--1062--9591Chr02:23766616..23766640 (25 bp)
TCATTATCCTCTTTGCAAACTCTAC
LOC_Os02g39390
Os.51717.1.S1_at--50--10011Chr02:23766765..23766789 (25 bp)
TAGCTTCCTTTATGTTCTGTGTCTT
LOC_Os02g39390
Os.51717.1.S1_at--625--5051Chr02:23766858..23766882 (25 bp)
GCAGAAGTACATGCGTGTGCCACTT
LOC_Os02g39390
Os.51717.1.S1_at--544--8691Chr02:23766873..23766897 (25 bp)
TGTGCCACTTCCTCTATTACGAATG
LOC_Os02g39390
Target Sequence 
TCATGTGCTTTTTCCATCTGAGGTGGTAGCAGCGTTTTTTGAAGAAGTAAAAGAGATGGAGCTGGAACCTGAGATTCTTC
CAGAGAACAATAGGCGTCGCTCAAGTTCAGGTGATAAAATGAAGCTGGCTGAAGATCCTTTCACGGAAGACGAGCTTGAC
TACTACCCATTTCTTGAGAACAATCCCGTTGAGTTTCAGCTGAGAGATGAGCTACCACTCCTGGAGCCTGGAATGAACTG
AAGAATGCTAATCTGCCCCACTTGAAAAGACCTCAGAACAGTGCTATTATCATCATTATCCTCTTTGCAAACTCTACTTG
CTCAGGAGCAGTTTATTTGTAGTAGTAGTAGTAGTAACTAGTATCCTAGATGTTCTGCTGTATGTGGTTGGTGTGATAAT
CATTCACACTTTAGGAAGAACCCAAGTAGCGGAAGCAACTTTAGCTTCCTTTATGTTCTGTGTCTTGGCTGAAATACCCA
TCATTAAGCCATTGTGTAAATGGTAGTAGTAGTAAACTGTAGTGTAAGGATTCTGCAGAAGTACATGCGTGTGCCACTTC
CTCTATTACGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis