Browse Element(s) Details

OsAffx.28210.1.S1_at

Description

tigr:9634.m04991
TID=OsAffx.28210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to callose synthase 1 catalytic subunit
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51270	11/11	callose synthase 1, putative, expressed
LOC_Os02g39340	1/11	glycine-rich protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51240	Os.23648.1.S1_s_at	11/11	6	+	31007027..31010326	expressed protein
LOC_Os06g51240	Os.23648.1.S2_s_at	11/11	6	+	31007027..31010326	expressed protein
LOC_Os06g51240	OsAffx.28209.3.S1_s_at	11/11	6	+	31007027..31010326	expressed protein
LOC_Os06g51250	Os.8291.1.A1_at	11/11	6	+	31012883..31020744	EF hand family protein, expressed
LOC_Os06g51250	Os.8291.2.S1_at	10/11	6	+	31012883..31020744	EF hand family protein, expressed
LOC_Os06g51260	Os.18955.1.S1_at	11/11	6	+	31024947..31027986	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g51270	OsAffx.28210.1.S1_at	11/11	6	+	31032422..31047463	callose synthase 1, putative, expressed
LOC_Os06g51280	NA	NA	6	+	31048805..31049630	acetohydroxyacid synthase, putative
LOC_Os06g51290	Os.7931.1.S1_s_at	11/11	6	+	31050985..31054928	Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290	Os.7931.1.S1_a_at	11/11	6	+	31050985..31054928	Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290	Os.37287.1.S1_at	9/11	6	+	31050985..31054928	Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51300	NA	NA	6	+	31062170..31062451	hypothetical protein
LOC_Os06g51310	Os.18590.1.S1_a_at	11/11	6	+	31068078..31076380	PINHEAD protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006075	biological_process	beta-1,3 glucan biosynthesis
GO:0009556	biological_process	microsporogenesis
GO:0009860	biological_process	pollen tube growth
GO:0010208	biological_process	pollen wall formation
GO:0000148	cellular_component	1,3-beta-glucan synthase complex
GO:0009504	cellular_component	cell plate
GO:0003843	molecular_function	1,3-beta-glucan synthase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28210.1.S1_at--496--11	1	Chr06:31033629..31033653 (25 bp)	ATTCTTGAAATTCTGCTCGCGTTGC	LOC_Os06g51270
OsAffx.28210.1.S1_at--190--347	1	Chr06:31033460..31033570 (25 bp)	CAGTGTACTGGTTTATTGCTTTTCA	LOC_Os06g51270
OsAffx.28210.1.S1_at--922--101	1	Chr06:31033230..31033254 (25 bp)	AGGTTCAGTGCGGAGTTCCAGCTTG	LOC_Os06g51270
OsAffx.28210.1.S1_at--1084--921	1	Chr06:31033214..31033238 (25 bp)	TCCAGCTTGTCTTCCGGTTGATCAA	LOC_Os06g51270
OsAffx.28210.1.S1_at--808--353	1	Chr06:31033141..31033165 (25 bp)	CATCCCTCACATGACAGTTCTTGAT	LOC_Os06g51270
OsAffx.28210.1.S1_at--60--1079	1	Chr06:31033121..31033145 (25 bp)	TTGATATCTTCGTTTGCATCCTTGC	LOC_Os06g51270
OsAffx.28210.1.S1_at--149--925	1	Chr06:31033103..31033127 (25 bp)	TCCTTGCTTTCATGCCAACTGGATG	LOC_Os06g51270
OsAffx.28210.1.S1_at--416--1073	1	Chr06:31032976..31033098 (25 bp)	TTGCTTCTGATTGCGCAAGCCATCA	LOC_Os06g51270
OsAffx.28210.1.S1_at--843--235	1	Chr06:31032952..31032976 (25 bp)	AAACCTGCTGTCCAGGCTATTGGGC	LOC_Os06g51270
OsAffx.28210.1.S1_at--476--973	1	Chr06:31032885..31032909 (25 bp)	TAATGGGACTCCTGTTATTCACACC	LOC_Os06g51270
OsAffx.28210.1.S1_at--27--31	2	Chr02:23742713..23742940 (25 bp)	ATAGCGTTCCTTGCTTGGTTTCCTT	LOC_Os02g39340

Target Sequence

ATTCTTGAAATTCTGCTCGCGTTGCGCTTCTTTGTCTACCAATATGGGCTTGTGTATCATTTGAATATAACCAAGCATAC
TCGCAGTGTACTGGTTTATTGCTTTTCATGGGTTGTGATTTTCGTAATTTTACTTGTCATGAAGACTGTTTCAGTCGGTA
GGAGGAGGTTCAGTGCGGAGTTCCAGCTTGTCTTCCGGTTGATCAAGGGCCTTATATTCATAACATTTGTCGCCATTGTT
GTGATATTAATTGCCATCCCTCACATGACAGTTCTTGATATCTTCGTTTGCATCCTTGCTTTCATGCCAACTGGATGGGG
CTTGCTTCTGATTGCGCAAGCCATCAAACCTGCTGTCCAGGCTATTGGGCTTTGGGGATCAATCAAGGCTCTTGCCCGGG
GCTATGAGATCCTAATGGGACTCCTGTTATTCACACCCATAGCGTTCCTTGCTTGGTTTCCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis