Browse Element(s) Details


Os.8291.1.A1_at

Description gb:CB630801
DB_XREF= gi:29625790
DB_XREF=OSIIEb07P06.r
CLONE=OSIIEb07P06
TID=Os.8291.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8291 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173499.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5125011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51220Os.12832.1.S1_a_at11/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220Os.14431.1.S1_x_at1/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230NANA6+30996881..31002886expressed protein
LOC_Os06g51240Os.23648.1.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240Os.23648.1.S2_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240OsAffx.28209.3.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51250Os.8291.1.A1_at11/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51250Os.8291.2.S1_at10/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51260Os.18955.1.S1_at11/116+31024947..31027986myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g51270OsAffx.28210.1.S1_at11/116+31032422..31047463callose synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8291.1.A1_at--642--291Chr06:31020170..31020194 (25 bp)
ATAGCAGCAGCGACCATGACAGAAC
LOC_Os06g51250
Os.8291.1.A1_at--355--3251Chr06:31020237..31020261 (25 bp)
CAACAGCCGAGGTTATTCGTTCGAT
LOC_Os06g51250
Os.8291.1.A1_at--1111--6351Chr06:31020268..31020292 (25 bp)
GATCCTTTTGGTACTGGACCGTTCA
LOC_Os06g51250
Os.8291.1.A1_at--160--8111Chr06:31020283..31020307 (25 bp)
GGACCGTTCAAGTCATCAGACACCT
LOC_Os06g51250
Os.8291.1.A1_at--202--791Chr06:31020384..31020408 (25 bp)
ATGTGTTTGTGCACCTTACTGCAGA
LOC_Os06g51250
Os.8291.1.A1_at--324--2751Chr06:31020434..31020458 (25 bp)
AAGACAGTTTTTGCTTGGGCCTCAG
LOC_Os06g51250
Os.8291.1.A1_at--451--10091Chr06:31020511..31020535 (25 bp)
TAGGATCTGATGTTCTACCGCGCAT
LOC_Os06g51250
Os.8291.1.A1_at--1155--2791Chr06:31020590..31020614 (25 bp)
AAGATGTGAGTCAATCCGGCGGATT
LOC_Os06g51250
Os.8291.1.A1_at--1016--4071Chr06:31020624..31020648 (25 bp)
CGAGCTGTCCATGTTTTTAGCGTTT
LOC_Os06g51250
Os.8291.1.A1_at--35--4651Chr06:31020643..31020667 (25 bp)
GCGTTTTCATATTCTTGTGCCTTAC
LOC_Os06g51250
Os.8291.1.A1_at--465--7271Chr06:31020659..31020683 (25 bp)
GTGCCTTACATTTTCCTCCTGTAAA
LOC_Os06g51250
Target Sequence 
ATAGCAGCAGCGACCATGACAGAACAGATGCTTTTGCGAGATTTGATTCAATGAAGAGCACGGACTACAACAGCCGAGGT
TATTCGTTCGATGAGGATGATCCTTTTGGTACTGGACCGTTCAAGTCATCAGACACCTCTAGCCCGACGAAGCATGGAAC
CGACAGATGGAGTGCATTTTGACAGGTATTGATTGTACTATAGAGGTCATCATCATGTGTTTGTGCACCTTACTGCAGAT
AAATATATATACACGTACAAGGGCAAGACAGTTTTTGCTTGGGCCTCAGCTTGCAATGGGGCTTGCTTGTGTGTTTGCTT
TGTGTTTCTTATTTTTGTACCTAGGATCTGATGTTCTACCGCGCATATGTGTTGGTGGGATGGTGATTATAAACATTCTT
TATACCTTGTATTATTGTACAAGATGTGAGTCAATCCGGCGGATTGAAAAATTACGAGCTGTCCATGTTTTTAGCGTTTT
CATATTCTTGTGCCTTACATTTTCCTCCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8291.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis