Browse Element(s) Details


Os.12832.1.S1_a_at

Description gb:AF541859.1
DB_XREF= gi:23345286
GEN=HMG1
TID=Os.12832.1
CNT=599
FEA=FLmRNA
TIER=FL+Stack
STK=84
UG=Os.12832 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) HMG1 protein (HMG1) mRNA, complete cds.
PROD=HMG1 protein
FL= gb:AK062226.1 gb:AF541859.1 gb:AF093632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5122011/11DNA-binding protein MNB1B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein
LOC_Os06g51200OsAffx.28206.1.S1_at11/116+30976912..30980048expressed protein
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative
LOC_Os06g51220Os.12832.1.S1_a_at11/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220Os.14431.1.S1_x_at1/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230NANA6+30996881..31002886expressed protein
LOC_Os06g51240Os.23648.1.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240Os.23648.1.S2_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240OsAffx.28209.3.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51250Os.8291.1.A1_at11/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51250Os.8291.2.S1_at10/116+31012883..31020744EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12832.1.S1_a_at--473--5071Chr06:30993098..30993122 (25 bp)
GCAGCCGGTGATAGGTGGAAATCCC
LOC_Os06g51220
Os.12832.1.S1_a_at--353--8511Chr06:30993113..30993134 (22 bp)
TGGAAATCCCTGACCGAAGCGGACA
LOC_Os06g51220
Os.12832.1.S1_a_at--985--2671Chr06:30993232..30993252 (21 bp)
AAGCGGACAAGGCTCCCTATGTAGC
LOC_Os06g51220
Os.12832.1.S1_a_at--226--891Chr06:30993237..30993261 (25 bp)
AGGCTCCCTATGTAGCCAAGGCCAA
LOC_Os06g51220
Os.12832.1.S1_a_at--778--2951Chr06:30993284..30993308 (25 bp)
AAGGCCATTGCTGCCTACAACAAGG
LOC_Os06g51220
Os.12832.1.S1_a_at--176--6011Chr06:30993399..30993422 (24 bp)
GAGAGCACTGCCAAGAAGGCACCCG
LOC_Os06g51220
Os.12832.1.S1_a_at--314--5351Chr06:30993813..30993837 (25 bp)
GAAGACGATGACGAGTGAGCCTTCC
LOC_Os06g51220
Os.12832.1.S1_a_at--812--9591Chr06:30993899..30993923 (25 bp)
TCATCATCATCGTCTACTAGAATTA
LOC_Os06g51220
Os.12832.1.S1_a_at--410--10531Chr06:30993924..30993948 (25 bp)
TTCAGTTTCACTTCACATCGTGATG
LOC_Os06g51220
Os.12832.1.S1_a_at--25--511Chr06:30993940..30993964 (25 bp)
ATCGTGATGTTTTACTTTTTCTCTC
LOC_Os06g51220
Os.12832.1.S1_a_at--525--9911Chr06:30994064..30994088 (25 bp)
TACTCTTTCCATTGTCATCGGCTAA
LOC_Os06g51220
Target Sequence 
GCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGA
GTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACG
ACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGAT
GACGAGTGAGCCTTCCAGTGGACAAGATGGGAGCAGCAAGACGCTAAGGGCGGCGGGCGTCCTAAGGAGCCTATCCATCA
TCATCATCGTCTACTAGAATTATTCAGTTTCACTTCACATCGTGATGTTTTACTTTTTCTCTCGTCCTATAACGGATAGC
GCTCCTTGTTGGCGCCACTGGTGGGTGTTGTGGTGCAGCCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAG
ATTACTCTTTCCATTGTCATCGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12832.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis