Browse Element(s) Details


OsAffx.28206.1.S1_at

Description tigr:9634.m04980
TID=OsAffx.28206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY091188 putative storage protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5120011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51170Os.27283.1.S1_at11/116+30952103..30955666serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180OsAffx.5163.1.S1_at11/116+30956573..30964056hypothetical protein
LOC_Os06g51180OsAffx.16016.1.S1_at10/116+30956573..30964056hypothetical protein
LOC_Os06g51180Os.11300.2.S1_at1/116+30956573..30964056hypothetical protein
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein
LOC_Os06g51200OsAffx.28206.1.S1_at11/116+30976912..30980048expressed protein
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative
LOC_Os06g51220Os.12832.1.S1_a_at11/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220Os.14431.1.S1_x_at1/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230NANA6+30996881..31002886expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28206.1.S1_at--135--5291Chr06:30978222..30978246 (25 bp)
GAATGGGTTGGAGATATCGCAGCCA
LOC_Os06g51200
OsAffx.28206.1.S1_at--92--531Chr06:30978237..30978261 (25 bp)
ATCGCAGCCAGGATTGGACAGCACA
LOC_Os06g51200
OsAffx.28206.1.S1_at--1062--5711Chr06:30978273..30978297 (25 bp)
GACGTATGAAGTCACCGTTCGAAGA
LOC_Os06g51200
OsAffx.28206.1.S1_at--1004--2571Chr06:30978298..30978322 (25 bp)
AACGACGGCCGGGAAATGCACAAGT
LOC_Os06g51200
OsAffx.28206.1.S1_at--1042--8171Chr06:30978614..30978638 (25 bp)
GGAAGCCTGGACATGCGTCTGGCAC
LOC_Os06g51200
OsAffx.28206.1.S1_at--953--4011Chr06:30978629..30978651 (23 bp)
CGTCTGGCACATGATTCAGGCAATA
LOC_Os06g51200
OsAffx.28206.1.S1_at--409--4391Chr06:30978715..30978739 (25 bp)
GCCAATGGAACTGTATATGCTTATA
LOC_Os06g51200
OsAffx.28206.1.S1_at--1053--71Chr06:30978970..30979048 (25 bp)
ATTGCCCAGGGTCTCCTTTGTTTGT
LOC_Os06g51200
OsAffx.28206.1.S1_at--833--6771Chr06:30979057..30979081 (25 bp)
GTTACTAATCAATTTCTCGATCTCT
LOC_Os06g51200
OsAffx.28206.1.S1_at--604--9371Chr06:30979073..30979097 (25 bp)
TCGATCTCTTTCTTCAGGGTAACGG
LOC_Os06g51200
OsAffx.28206.1.S1_at--607--10551Chr06:30979082..30979106 (25 bp)
TTCTTCAGGGTAACGGTGAACAACA
LOC_Os06g51200
Target Sequence 
GAATGGGTTGGAGATATCGCAGCCAGGATTGGACAGCACAAGAGGGAAGAAGACGTATGAAGTCACCGTTCGAAGAAACG
ACGGCCGGGAAATGCACAAGTTCGTGGAGGTGATGGCGCCCGTCTTCTCCAGGGAAGCCTGGACATGCGTCTGGCACATG
ATTCAGGCAATAAACGAGCCAATGGAACTGTATATGCTTATAAATATGCAGAATGACTTGGTTCATGGCTGGGGTCTGGA
CTTCAATTTCTGGAGATGCGTCGACAATCCTGAAGAGCAGATCGGCATCGTGGACGCGCAGTACGTGTCCCATCATGGAG
TTCCCACGCTCATTGCCCAGGGTCTCCTTTGTTTGTTTGTTTGTGTTACTAATCAATTTCTCGATCTCTTTCTTCAGGGT
AACGGTGAACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis