Browse Element(s) Details

Os.14431.1.S1_x_at

Description

gb:BI806115
DB_XREF= gi:15853319
DB_XREF=S057H03
CLONE=S057H03
TID=Os.14431.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14431 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51220	1/11	DNA-binding protein MNB1B, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51190	Os.56657.1.S1_at	10/11	6	+	30966321..30972488	expressed protein
LOC_Os06g51200	OsAffx.28206.1.S1_at	11/11	6	+	30976912..30980048	expressed protein
LOC_Os06g51210	OsAffx.28207.1.S1_at	11/11	6	+	30985741..30987363	zinc finger family protein, putative
LOC_Os06g51220	Os.12832.1.S1_a_at	11/11	6	+	30992256..30994284	DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220	Os.14431.1.S1_x_at	1/11	6	+	30992256..30994284	DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230	NA	NA	6	+	30996881..31002886	expressed protein
LOC_Os06g51240	Os.23648.1.S1_s_at	11/11	6	+	31007027..31010326	expressed protein
LOC_Os06g51240	Os.23648.1.S2_s_at	11/11	6	+	31007027..31010326	expressed protein
LOC_Os06g51240	OsAffx.28209.3.S1_s_at	11/11	6	+	31007027..31010326	expressed protein
LOC_Os06g51250	Os.8291.1.A1_at	11/11	6	+	31012883..31020744	EF hand family protein, expressed
LOC_Os06g51250	Os.8291.2.S1_at	10/11	6	+	31012883..31020744	EF hand family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006333	biological_process	chromatin assembly or disassembly
GO:0000785	cellular_component	chromatin
GO:0003677	molecular_function	DNA binding
GO:0003682	molecular_function	chromatin binding
GO:0003700	molecular_function	transcription factor activity
GO:0030527	molecular_function	structural constituent of chromatin

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14431.1.S1_x_at--408--465	1	NONE	GCGTCCTTATAGGAGCCTATCCATC	NONE
Os.14431.1.S1_x_at--74--727	1	NONE	GTCCTTATAGGAGCCTATCCATCGA	NONE
Os.14431.1.S1_x_at--330--1019	1	NONE	TATAGGAGCCTATCCATCGATCGAT	NONE
Os.14431.1.S1_x_at--196--587	1	NONE	GAGCCTATCCATCGATCGATCATCG	NONE
Os.14431.1.S1_x_at--350--939	1	NONE	TCGATCATCGTCTGACTAGAATTAT	NONE
Os.14431.1.S1_x_at--907--777	1	NONE	GGTGCAGCCCATGTCTGTGTCTCCC	NONE
Os.14431.1.S1_x_at--124--77	1	NONE	ATGTCTGTGTCTCCCCCGTCATGAT	NONE
Os.14431.1.S1_x_at--111--713	1	Chr06:30994043..30994064 (22 bp)	GTCATGATCCGCTTGTACCTAGATT	LOC_Os06g51220
Os.14431.1.S1_x_at--1006--365	1	NONE	CTTTCCCTGTCATCGGCTAACCTTG	NONE
Os.14431.1.S1_x_at--712--1023	1	NONE	TTTCCCTGTCATCGGCTAACCTTGT	NONE
Os.14431.1.S1_x_at--644--419	1	NONE	CCCTGTCATCGGCTAACCTTGTGAT	NONE

Target Sequence

GCGTCCTTATAGGAGCCTATCCATCGATCGATCATCGTCTGACTAGAATTATTCAGTTNCACGTCACACTCGTGANGNTT
TACTTTTTCTCTCGTCCTATAACGGATAGCGCTCCTTGTTGGCGCCCCTGGTGGGTNTTCCNGGTGCAGCCCATGTCTGT
GTCTCCCCCGTCATGATCCGCTTGTACCTAGATTACNCTTTCCCTGTCATCGGCTAACCTTGTGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis