Browse Element(s) Details


Os.56657.1.S1_at

Description gb:AK110259.1
DB_XREF= gi:32995468
TID=Os.56657.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-A12, full insert sequence.
FL= gb:AK110259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5119010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51150Os.156.1.S1_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.1.A1_s_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.156.2.S1_x_at10/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.2.A1_x_at4/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51160Os.28351.1.A1_a_at2/116+30947621..30950472Glycosyltransferase QUASIMODO1, putative
LOC_Os06g51170Os.27283.1.S1_at11/116+30952103..30955666serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180OsAffx.5163.1.S1_at11/116+30956573..30964056hypothetical protein
LOC_Os06g51180OsAffx.16016.1.S1_at10/116+30956573..30964056hypothetical protein
LOC_Os06g51180Os.11300.2.S1_at1/116+30956573..30964056hypothetical protein
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein
LOC_Os06g51200OsAffx.28206.1.S1_at11/116+30976912..30980048expressed protein
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative
LOC_Os06g51220Os.12832.1.S1_a_at11/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220Os.14431.1.S1_x_at1/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230NANA6+30996881..31002886expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56657.1.S1_at--196--1531Chr06:30971943..30971967 (25 bp)
AGCAGATCATCATCGCTGAGTTATT
LOC_Os06g51190
Os.56657.1.S1_at--329--10491Chr06:30971977..30972001 (25 bp)
TTAACGTCAGCCTAGACCTCTACAT
LOC_Os06g51190
Os.56657.1.S1_at--450--9531Chr06:30971995..30972019 (25 bp)
TCTACATCATATATATCGTCTCGGA
LOC_Os06g51190
Os.56657.1.S1_at--1106--7591Chr06:30972066..30972090 (25 bp)
GGGCAAAATTAACTAGGCTCACGAG
LOC_Os06g51190
Os.56657.1.S1_at--580--8311Chr06:30972081..30972105 (25 bp)
GGCTCACGAGAGCACATATGAACTA
LOC_Os06g51190
Os.56657.1.S1_at--397--6751Chr06:30972210..30972234 (25 bp)
GTTAAAACTGCACCCTACAGTACCA
LOC_Os06g51190
Os.56657.1.S1_at--340--10551NONE
TTCATTTCTTCCTCTAGCTACCTTC
NONE
Os.56657.1.S1_at--1094--9251Chr06:30972348..30972372 (25 bp)
TCCTCTTTTAATTTGACTCATTGCG
LOC_Os06g51190
Os.56657.1.S1_at--293--5711Chr06:30972362..30972386 (25 bp)
GACTCATTGCGTACGTGTTGACTTT
LOC_Os06g51190
Os.56657.1.S1_at--300--4871Chr06:30972398..30972422 (25 bp)
GCTAGGTCTCGTTTAATTTCTGTAA
LOC_Os06g51190
Os.56657.1.S1_at--561--6871Chr06:30972457..30972481 (25 bp)
GTATCTACACAATATTGGTCGGTTC
LOC_Os06g51190
Target Sequence 
AGCAGATCATCATCGCTGAGTTATTAATTAACAATTAACGTCAGCCTAGACCTCTACATCATATATATCGTCTCGGATGA
TCAAATTAACCAGATTTAGTTACAAAGAGGCAGGTTCTTTGGGGGGCAAAATTAACTAGGCTCACGAGAGCACATATGAA
CTAGTTTAGTATACATGGCATGGTTAATTTGAAAGTTAAAAAAACATTTGACAGCCAAAGAGATAATGTGAGCACTTTAA
TTGAGAAATCGAATATGGGATCATGGGGTTAAAACTGCACCCTACAGTACCAAATATACATCTCAAGCCAAATAGTACTA
AAAACGACTTCAATTGATTTGCATTATTGCCTCAAAAGAAATTTGTGTTGATTCATTTCTTCCTCTAGCTACCTTCTCTT
TTTCTCCTCTTTTAATTTGACTCATTGCGTACGTGTTGACTTTATGTTGATTAAGCTAGGTCTCGTTTAATTTCTGTAAT
AAATCAGTTGAACTTCTGGTGTAGTAATATATAGTATCTACACAATATTGGTCGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis