Browse Element(s) Details


OsAffx.16016.1.S1_at

Description tigr:9634.m04978
TID=OsAffx.16016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=storage protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5118010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51140Os.55440.1.S1_at11/116+30934756..30935614Zinc finger, C2H2 type family protein, expressed
LOC_Os06g51150Os.156.1.S1_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.1.A1_s_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.156.2.S1_x_at10/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.2.A1_x_at4/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51160Os.28351.1.A1_a_at2/116+30947621..30950472Glycosyltransferase QUASIMODO1, putative
LOC_Os06g51170Os.27283.1.S1_at11/116+30952103..30955666serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180OsAffx.5163.1.S1_at11/116+30956573..30964056hypothetical protein
LOC_Os06g51180OsAffx.16016.1.S1_at10/116+30956573..30964056hypothetical protein
LOC_Os06g51180Os.11300.2.S1_at1/116+30956573..30964056hypothetical protein
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein
LOC_Os06g51200OsAffx.28206.1.S1_at11/116+30976912..30980048expressed protein
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16016.1.S1_at--218--9031Chr06:30961379..30961403 (25 bp)
TGCACCCGAGCATCGTTGCGGCGTA
LOC_Os06g51180
OsAffx.16016.1.S1_at--131--7031Chr06:30961461..30961485 (25 bp)
GTACATCAGCATCGTCAGGAAACAC
LOC_Os06g51180
OsAffx.16016.1.S1_at--448--951Chr06:30961477..30961501 (25 bp)
AGGAAACACGCCCTGGACATCTCGC
LOC_Os06g51180
OsAffx.16016.1.S1_at--205--9371Chr06:30961511..30961535 (25 bp)
TCGACGGCACCAAAGGGAGGAGACA
LOC_Os06g51180
OsAffx.16016.1.S1_at--1112--8011Chr06:30961526..30961550 (25 bp)
GGAGGAGACAGTACCCTGTCACCGT
LOC_Os06g51180
OsAffx.16016.1.S1_at--904--2131Chr06:30961533..30961557 (25 bp)
ACAGTACCCTGTCACCGTCAGGAGG
LOC_Os06g51180
OsAffx.16016.1.S1_at--813--1011Chr06:30961585..30961770 (25 bp)
AGGTTCGTCGAGAATGACTTGGTTC
LOC_Os06g51180
OsAffx.16016.1.S1_at--854--4371NONE
CCAACGCTCGTAAGCCAGGGCAATG
NONE
OsAffx.16016.1.S1_at--385--551Chr06:30963960..30963984 (25 bp)
ATCCCGGCAGTTTGAGGAGATGCAT
LOC_Os06g51180
OsAffx.16016.1.S1_at--872--971Chr06:30963974..30963998 (25 bp)
AGGAGATGCATACCTTCGACCGCAG
LOC_Os06g51180
OsAffx.16016.1.S1_at--752--9371Chr06:30963989..30964013 (25 bp)
TCGACCGCAGAATTGCCAGCGCCGA
LOC_Os06g51180
Target Sequence 
TGCACCCGAGCATCGTTGCGGCGTACGAGTACGTGTTCGTGTGGGATGAGGATCTGGGAGTTGACAACTTCACCGCGGAG
GAGTACATCAGCATCGTCAGGAAACACGCCCTGGACATCTCGCAGCCGGGGCTCGACGGCACCAAAGGGAGGAGACAGTA
CCCTGTCACCGTCAGGAGGCCCTCCGGCGACATGCACAACTCCGGCAGGTTCGTCGAGAATGACTTGGTTCATGGTTGGG
GTCTCGACTTCAATTTCTGGAGATGCGTCCACGAGCCTGAAAAGCATATAGGTGTCGTGGATGCGCAGTTCGTAGTCCAT
CGCGGCGTCCCAACGCTCGTAAGCCAGGGCAATGGAGAACAAGATGGAAGTAGTGCCAAGGTGAGATCCCGGCAGTTTGA
GGAGATGCATACCTTCGACCGCAGAATTGCCAGCGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis