Browse Element(s) Details

Description

gb:CB966666
DB_XREF= gi:30228776
DB_XREF=NL41_B04
CLONE=NL41_B04
TID=Os.39055.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39055 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51150	4/11	Catalase isozyme B, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51120	OsAffx.5161.1.S1_at	11/11	6	+	30919755..30920092	hypothetical protein
LOC_Os06g51130	OsAffx.28205.1.S1_at	11/11	6	+	30923199..30925167	U-box domain containing protein
LOC_Os06g51140	Os.55440.1.S1_at	11/11	6	+	30934756..30935614	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g51150	Os.156.1.S1_at	11/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.39055.1.A1_s_at	11/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.156.2.S1_x_at	10/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.39055.2.A1_x_at	4/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51160	Os.28351.1.A1_a_at	2/11	6	+	30947621..30950472	Glycosyltransferase QUASIMODO1, putative
LOC_Os06g51170	Os.27283.1.S1_at	11/11	6	+	30952103..30955666	serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180	OsAffx.5163.1.S1_at	11/11	6	+	30956573..30964056	hypothetical protein
LOC_Os06g51180	OsAffx.16016.1.S1_at	10/11	6	+	30956573..30964056	hypothetical protein
LOC_Os06g51180	Os.11300.2.S1_at	1/11	6	+	30956573..30964056	hypothetical protein
LOC_Os06g51190	Os.56657.1.S1_at	10/11	6	+	30966321..30972488	expressed protein

Gene Ontology Classification

GO id	Type	Name
GO:0042744	biological_process	hydrogen peroxide catabolism
GO:0005739	cellular_component	mitochondrion
GO:0005777	cellular_component	peroxisome
GO:0004096	molecular_function	catalase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.39055.2.A1_x_at--795--991	1	NONE	TACTGGTGACGCCAAGTTGTGAAAC	NONE
Os.39055.2.A1_x_at--612--193	1	NONE	ACTGGTGACGCCAAGTTGTGAAACT	NONE
Os.39055.2.A1_x_at--833--389	1	NONE	CTGGTGACGCCAAGTTGTGAAACTG	NONE
Os.39055.2.A1_x_at--989--861	1	NONE	TGGTGACGCCAAGTTGTGAAACTGT	NONE
Os.39055.2.A1_x_at--237--737	1	NONE	GTGACGCCAAGTTGTGAAACTGTAT	NONE
Os.39055.2.A1_x_at--592--893	1	NONE	TGACGCCAAGTTGTGAAACTGTATC	NONE
Os.39055.2.A1_x_at--264--581	1	NONE	GACGCCAAGTTGTGAAACTGTATCT	NONE
Os.39055.2.A1_x_at--763--181	1	Chr06:30946983..30947003 (21 bp)	ACGCCAAGTTGTGAAACTGTATCTG	LOC_Os06g51150
Os.39055.2.A1_x_at--394--417	1	Chr06:30946983..30947004 (22 bp)	CGCCAAGTTGTGAAACTGTATCTGG	LOC_Os06g51150
Os.39055.2.A1_x_at--93--735	1	Chr06:30946989..30947013 (25 bp)	GTGAAACTGTATCTGGAATCCTGAA	LOC_Os06g51150
Os.39055.2.A1_x_at--915--525	1	Chr06:30947004..30947028 (25 bp)	GAATCCTGAAAATATGCCTTGCTGT	LOC_Os06g51150

Target Sequence

TACTGGTGACGCCAAGTTGTGAAACTGTATCTGGAATCCTGAAAATATGCCTTGCTGT

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: