Browse Element(s) Details


Os.27283.1.S1_at

Description gb:AK069558.1
DB_XREF= gi:32979582
TID=Os.27283.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021O21, full insert sequence.
FL= gb:AK069558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5117011/11serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51140Os.55440.1.S1_at11/116+30934756..30935614Zinc finger, C2H2 type family protein, expressed
LOC_Os06g51150Os.156.1.S1_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.1.A1_s_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.156.2.S1_x_at10/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.2.A1_x_at4/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51160Os.28351.1.A1_a_at2/116+30947621..30950472Glycosyltransferase QUASIMODO1, putative
LOC_Os06g51170Os.27283.1.S1_at11/116+30952103..30955666serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180OsAffx.5163.1.S1_at11/116+30956573..30964056hypothetical protein
LOC_Os06g51180OsAffx.16016.1.S1_at10/116+30956573..30964056hypothetical protein
LOC_Os06g51180Os.11300.2.S1_at1/116+30956573..30964056hypothetical protein
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein
LOC_Os06g51200OsAffx.28206.1.S1_at11/116+30976912..30980048expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27283.1.S1_at--1038--5451Chr06:30952678..30952702 (25 bp)
GAACTTGGTAGACTGGGCAAAACCG
LOC_Os06g51170
Os.27283.1.S1_at--434--9731Chr06:30952556..30952580 (25 bp)
TCAAGTGTCTGTCTGGTGATCCCAA
LOC_Os06g51170
Os.27283.1.S1_at--964--9311Chr06:30952537..30952561 (25 bp)
TCCCAAGAGCCGACCATCCATGAAG
LOC_Os06g51170
Os.27283.1.S1_at--735--1151Chr06:30952510..30952534 (25 bp)
AGTCGTTGAGGCTCTCGAGAAGATC
LOC_Os06g51170
Os.27283.1.S1_at--926--111Chr06:30952479..30952503 (25 bp)
ATTAAGAGCAAGTCGAGGGAGCCCA
LOC_Os06g51170
Os.27283.1.S1_at--1070--5491Chr06:30952453..30952477 (25 bp)
GAACAGCTCCTCACTGGTGCGTGGA
LOC_Os06g51170
Os.27283.1.S1_at--687--4631Chr06:30952409..30952433 (25 bp)
GCGATAGCGCGAGGACGAGCTCCAA
LOC_Os06g51170
Os.27283.1.S1_at--867--1591Chr06:30952392..30952416 (25 bp)
AGCTCCAAGGGCAGATGATCGTAGA
LOC_Os06g51170
Os.27283.1.S1_at--916--6411Chr06:30952312..30952336 (25 bp)
GATCTCAATTCTTGATGTCATGACG
LOC_Os06g51170
Os.27283.1.S1_at--436--5391Chr06:30952185..30952209 (25 bp)
GAAGCATCACGGGTTGCATCAGGTT
LOC_Os06g51170
Os.27283.1.S1_at--925--7111Chr06:30952135..30952159 (25 bp)
GTCAGTTTATATGCTTTCCTTTCAT
LOC_Os06g51170
Target Sequence 
GAACTTGGTAGACTGGGCAAAACCGTTNCTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTNTTGAGGGGC
AGTATCATTNCAGGGGAGCCCTCCAAGCTGNTCAGCTCACTNTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCC
ATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACT
GGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAA
GATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCN
CCGATCATGATGATCAATGTAACAGTACAAAAATATNCTAAATCTTTATAGCTGTCATATAGTCATNTGCATAAATTCAA
TTATTTTTGTATTGAAGCATCACGGGTTGCATCAGGTTGCACTGAGAACAGCAAGAAGTCATTGTCAGTTTATATGCTTT
CCTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis