Browse Element(s) Details

Os.55440.1.S1_at

Description

gb:AK108097.1
DB_XREF= gi:32993306
TID=Os.55440.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-A09, full insert sequence.
FL= gb:AK108097.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51140	11/11	Zinc finger, C2H2 type family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51100	Os.49835.1.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S2_x_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.2.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_x_at	10/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.26963.1.A1_at	1/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51110	Os.2693.2.S1_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51110	Os.2693.1.S1_x_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51120	OsAffx.5161.1.S1_at	11/11	6	+	30919755..30920092	hypothetical protein
LOC_Os06g51130	OsAffx.28205.1.S1_at	11/11	6	+	30923199..30925167	U-box domain containing protein
LOC_Os06g51140	Os.55440.1.S1_at	11/11	6	+	30934756..30935614	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g51150	Os.156.1.S1_at	11/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.39055.1.A1_s_at	11/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.156.2.S1_x_at	10/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.39055.2.A1_x_at	4/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51160	Os.28351.1.A1_a_at	2/11	6	+	30947621..30950472	Glycosyltransferase QUASIMODO1, putative
LOC_Os06g51170	Os.27283.1.S1_at	11/11	6	+	30952103..30955666	serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180	OsAffx.5163.1.S1_at	11/11	6	+	30956573..30964056	hypothetical protein
LOC_Os06g51180	OsAffx.16016.1.S1_at	10/11	6	+	30956573..30964056	hypothetical protein
LOC_Os06g51180	Os.11300.2.S1_at	1/11	6	+	30956573..30964056	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55440.1.S1_at--1042--783	1	Chr06:30935217..30935241 (25 bp)	GGTACCGCTACGTGTGCGACCGATG	LOC_Os06g51140
Os.55440.1.S1_at--88--461	1	Chr06:30935202..30935226 (25 bp)	GCGACCGATGCAAGGCGCCGTTCGA	LOC_Os06g51140
Os.55440.1.S1_at--747--169	1	Chr06:30935137..30935161 (25 bp)	ACCAAGAAGGGCTGCTCCTGGCACG	LOC_Os06g51140
Os.55440.1.S1_at--1063--971	1	Chr06:30935067..30935091 (25 bp)	TCAACCATCTCTCACTTGAGGCCAT	LOC_Os06g51140
Os.55440.1.S1_at--699--897	1	Chr06:30934960..30934984 (25 bp)	TGAACTTGCTTAGGGTTCGTTCGGT	LOC_Os06g51140
Os.55440.1.S1_at--742--51	1	Chr06:30934929..30934953 (25 bp)	ATCGATCGACTTCTTGTGCTTGCGT	LOC_Os06g51140
Os.55440.1.S1_at--846--493	1	Chr06:30934891..30934915 (25 bp)	GCTTGTGTTGGTTCGTAGCTAGCCA	LOC_Os06g51140
Os.55440.1.S1_at--333--785	1	Chr06:30934882..30934906 (25 bp)	GGTTCGTAGCTAGCCAACTCCATGG	LOC_Os06g51140
Os.55440.1.S1_at--46--255	1	Chr06:30934867..30934891 (25 bp)	AACTCCATGGCTCATGCAGCATATG	LOC_Os06g51140
Os.55440.1.S1_at--946--65	1	Chr06:30934845..30934869 (25 bp)	ATGCACATATGTCTCTTTCTCTTCT	LOC_Os06g51140
Os.55440.1.S1_at--321--1027	2	Chr08:24436796..24437024 (25 bp)	TTTGATTTTTTGTAAGCTCGATCGA	NONE

Target Sequence

GGTACCGCTACGTGTGCGACCGATGCAAGGCGCCGTTCGAGACGCGGCAGGCGCTGGGTGGGCACCGTGCCAGCCACAGC
ACCAAGAAGGGCTGCTCCTGGCACGCCAAGCAGCTCGCCATGGCCAAGCCGCCCAAGAACGACTTCGACCTCAACCATCT
CTCACTTGAGGCCATCCAGGCGGCGGCGCAAGAGGAACAAGCTGCTCAAGAGGGGAACAAGGATGAGGAGCCTAAGAATT
AATTAATTAGGAATAATTGAACTTGCTTAGGGTTCGTTCGGTCGGTCGATCGATCGACTTCTTGTGCTTGCGTTGCGTCG
GTCTGGGCTTGTGTTGGTTCGTAGCTAGCCAACTCCATGGCTCATGCAGCATATGCACATATGTCTCTTTCTCTTCTTTT
TCTTTTTTAGTTTTTGTTTCTCTTTGATTTTTTGTAAGCTCGATCGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis