Browse Element(s) Details

Os.2693.1.S1_x_at

Description

gb:AK070518.1
DB_XREF= gi:32980542
TID=Os.2693.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2693 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for cyclin 2
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055K12, full insert sequence.
FL= gb:AK070518.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51110	11/11	G2/mitotic-specific cyclin 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51060	Os.22000.1.S1_at	11/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.51172.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.2692.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_x_at	9/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_at	8/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51084	Os.22169.2.S2_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S1_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S2_x_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S1_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.5160.1.S1_s_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S2_at	9/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.4.S1_x_at	7/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.19654.1.S1_at	1/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S2_x_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.2.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_x_at	10/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.26963.1.A1_at	1/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51110	Os.2693.2.S1_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51110	Os.2693.1.S1_x_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51120	OsAffx.5161.1.S1_at	11/11	6	+	30919755..30920092	hypothetical protein
LOC_Os06g51130	OsAffx.28205.1.S1_at	11/11	6	+	30923199..30925167	U-box domain containing protein
LOC_Os06g51140	Os.55440.1.S1_at	11/11	6	+	30934756..30935614	Zinc finger, C2H2 type family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000074	biological_process	regulation of progression through cell cycle
GO:0007049	biological_process	cell cycle
GO:0016538	molecular_function	cyclin-dependent protein kinase regulator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.2693.1.S1_x_at--14--483	1	Chr06:30914776..30914800 (25 bp)	GCTCAGTGCACCATTAATGGGTTCA	LOC_Os06g51110
Os.2693.1.S1_x_at--640--275	1	Chr06:30914614..30914733 (25 bp)	AAGAACAGCTGATGGAGTGCTCCAA	LOC_Os06g51110
Os.2693.1.S1_x_at--306--629	1	Chr06:30914589..30914613 (25 bp)	GATGATGGTTGAGCTCCACCAAAAA	LOC_Os06g51110
Os.2693.1.S1_x_at--497--565	1	Chr06:30914560..30914584 (25 bp)	GACATGGGAAGCTTACTGGAGTTCA	LOC_Os06g51110
Os.2693.1.S1_x_at--57--359	1	Chr06:30914521..30914545 (25 bp)	CATTTAGGTATGGTTGCGCCGCAAA	LOC_Os06g51110
Os.2693.1.S1_x_at--103--715	1	Chr06:30914483..30914507 (25 bp)	GTCTTCTTGCTCAAGAGCGTGGCAC	LOC_Os06g51110
Os.2693.1.S1_x_at--313--467	1	Chr06:30914467..30914491 (25 bp)	GCGTGGCACTGTAACTGATTGGCTC	LOC_Os06g51110
Os.2693.1.S1_x_at--996--985	1	Chr06:30914438..30914462 (25 bp)	TACACACTCTAACTACTTCCATGGA	LOC_Os06g51110
Os.2693.1.S1_x_at--537--743	1	Chr06:30914398..30914422 (25 bp)	GTGTATATATAGAGGCCGGCTGCTT	LOC_Os06g51110
Os.2693.1.S1_x_at--790--87	1	Chr06:30914386..30914410 (25 bp)	AGGCCGGCTGCTTTGATGAAATTAC	LOC_Os06g51110
Os.2693.1.S1_x_at--394--519	1	Chr06:30914294..30914318 (25 bp)	GCAATGTGTGCCTTTACTTCCAATA	LOC_Os06g51110

Target Sequence

GCTCAGTGCACCATTAATGGGTTCAAGTCCTGGNACAAATGCTGTGAGCTNGCATACAAAATACTCTGAAGAACAGCTGA
TGGAGTGCTCCAAGATGATGGTTGAGCTCCACCAAAAAGCAGGACATGGGAAGCTTACTGGAGTTCATAGAAAGTACAGC
ACATTTAGGTATGGTTGCGCCGCAAAATCGGAGCCCGCCGTCTTCTTGCTCAAGAGCGTGGCACTGTAACTGATTGGCTC
ACTANTACACACTCTAACTACTTCCATGGAAAGAGGGAATGAGGGGTGTATATATAGAGGCCGGCTGCTTTGATGAAATT
ACAGAGAAGAGATCTGCATATATGCAACAGCTGTTGCAAAGGATTATTTGATGGGTGGGTTGGGTTGGNGCAATGTGTGC
CTTTACTTCCAATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis