Browse Element(s) Details

Os.22169.2.S2_a_at

Description

gb:AK068920.1
DB_XREF= gi:32978944
TID=Os.22169.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for branching enzyme, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170H02, full insert sequence.
FL= gb:AK068920.1 gb:AK120332.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51084	11/11	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51029	Os.22474.1.S1_at	11/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.43567.1.S1_x_at	3/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.38172.1.S1_x_at	2/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.53217.1.S1_x_at	1/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51050	Os.51172.1.S1_x_at	11/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51050	Os.2692.1.S1_x_at	8/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.22000.1.S1_at	11/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.51172.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.2692.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_x_at	9/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_at	8/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51084	Os.22169.2.S2_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S1_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S2_x_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S1_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.5160.1.S1_s_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S2_at	9/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.4.S1_x_at	7/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.19654.1.S1_at	1/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S2_x_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.2.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_x_at	10/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.26963.1.A1_at	1/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51110	Os.2693.2.S1_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51110	Os.2693.1.S1_x_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51120	OsAffx.5161.1.S1_at	11/11	6	+	30919755..30920092	hypothetical protein
LOC_Os06g51130	OsAffx.28205.1.S1_at	11/11	6	+	30923199..30925167	U-box domain containing protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005975	biological_process	carbohydrate metabolism
GO:0010021	biological_process	amylopectin biosynthesis
GO:0003844	molecular_function	1,4-alpha-glucan branching enzyme activity
GO:0004556	molecular_function	alpha-amylase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.22169.2.S2_a_at--155--387	1	Chr06:30897958..30897982 (25 bp)	CTGATGCTTTGGTCTTTGGTGGCCA	LOC_Os06g51084
Os.22169.2.S2_a_at--1158--487	1	Chr06:30897953..30897977 (25 bp)	GCTTTGGTCTTTGGTGGCCATGGAA	LOC_Os06g51084
Os.22169.2.S2_a_at--931--877	1	Chr06:30897951..30897975 (25 bp)	TTTGGTCTTTGGTGGCCATGGAAGA	LOC_Os06g51084
Os.22169.2.S2_a_at--1087--277	1	Chr06:30897813..30897833 (21 bp)	AAGAGTTGGCCATGATGTGGATCAC	LOC_Os06g51084
Os.22169.2.S2_a_at--707--661	1	Chr06:30897809..30897833 (25 bp)	GTTGGCCATGATGTGGATCACTTCA	LOC_Os06g51084
Os.22169.2.S2_a_at--1007--843	1	Chr06:30897806..30897830 (25 bp)	GGCCATGATGTGGATCACTTCACGT	LOC_Os06g51084
Os.22169.2.S2_a_at--387--433	1	Chr06:30897804..30897828 (25 bp)	CCATGATGTGGATCACTTCACGTCT	LOC_Os06g51084
Os.22169.2.S2_a_at--1037--801	1	Chr06:30897764..30897788 (25 bp)	GGAGTACCAGAAACAAATTTCAACA	LOC_Os06g51084
Os.22169.2.S2_a_at--553--523	1	Chr06:30897260..30897284 (25 bp)	GAATAAGCAGTGATGATGTGGCCTT	LOC_Os06g51084
Os.22169.2.S2_a_at--516--151	1	Chr06:30897255..30897279 (25 bp)	AGCAGTGATGATGTGGCCTTAAACC	LOC_Os06g51084
Os.22169.2.S2_a_at--841--887	1	Chr06:30897247..30897271 (25 bp)	TGATGTGGCCTTAAACCTGAGCTGC	LOC_Os06g51084

Target Sequence

CTGATGCTTTGGTCTTTGGTGGCCATGGAAGAGTTGGCCATGATGTGGATCACTTCACGTCTCCCGAGGGAATGCCAGGA
GTACCAGAAACAAATTTCAACAACCGCCCTAACTCATTCAAAGTCCTTTCCCCGCCCCGTACCTGTGTGGCTTACTATCG
CGTTGATGAAGATCGTGAAGAGCTCAGGAGGGGTGGAGCAGTTGCTTCTGGAAAGATTGTTACAGAGTATATCGATGTTG
AAGCAACAAGTGGGGAGACTATCTCTGGTGGCTGGAAGGGCTCCGAGAAGGACGATTGTGGCAAGAAAGGGATGAAGTTT
GTGTTTCGGTCTTCTGACGAAGACTGCAAATGAAGCATCAGATTTCTTGATCAGGAGCAACTGTTGGTGCCCTTGTAATC
TGGAGATCCTGGCTTGCCTTGGACTTGGTTGTGGTTCTTTAGCAGTTGCTATGTACCTATCTATGATATGAACTTTATGT
ATAGTTCGCCTTAAAGAAAGAATAAGCAGTGATGATGTGGCCTTAAACCTGAGCTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis