Browse Element(s) Details

OsAffx.28205.1.S1_at

Description

tigr:9634.m04971
TID=OsAffx.28205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=arm repeat containing protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51130	11/11	U-box domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51084	Os.22169.2.S2_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S1_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S2_x_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S1_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.5160.1.S1_s_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S2_at	9/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.4.S1_x_at	7/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.19654.1.S1_at	1/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S2_x_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.2.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_x_at	10/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.26963.1.A1_at	1/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51110	Os.2693.2.S1_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51110	Os.2693.1.S1_x_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51120	OsAffx.5161.1.S1_at	11/11	6	+	30919755..30920092	hypothetical protein
LOC_Os06g51130	OsAffx.28205.1.S1_at	11/11	6	+	30923199..30925167	U-box domain containing protein
LOC_Os06g51140	Os.55440.1.S1_at	11/11	6	+	30934756..30935614	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g51150	Os.156.1.S1_at	11/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.39055.1.A1_s_at	11/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.156.2.S1_x_at	10/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51150	Os.39055.2.A1_x_at	4/11	6	+	30943198..30947367	Catalase isozyme B, putative, expressed
LOC_Os06g51160	Os.28351.1.A1_a_at	2/11	6	+	30947621..30950472	Glycosyltransferase QUASIMODO1, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28205.1.S1_at--167--755	1	Chr06:30924575..30924599 (25 bp)	GGGCCATCCCCTTGATCATCGACGT	LOC_Os06g51130
OsAffx.28205.1.S1_at--427--41	1	Chr06:30924589..30924613 (25 bp)	ATCATCGACGTGCTCAGGAACGGCA	LOC_Os06g51130
OsAffx.28205.1.S1_at--749--481	1	Chr06:30924645..30924669 (25 bp)	GCTCTTCAGCCTGTCCATGGTGGAC	LOC_Os06g51130
OsAffx.28205.1.S1_at--246--549	1	Chr06:30924672..30924696 (25 bp)	GAACAAGGTCGCCATTGGGACCCTG	LOC_Os06g51130
OsAffx.28205.1.S1_at--677--357	1	Chr06:30924684..30924708 (25 bp)	CATTGGGACCCTGGGAGGCATACCT	LOC_Os06g51130
OsAffx.28205.1.S1_at--965--861	1	Chr06:30924713..30924737 (25 bp)	TGGTGGACCTCCTGCAGAACGGCAC	LOC_Os06g51130
OsAffx.28205.1.S1_at--369--143	1	Chr06:30924728..30924752 (25 bp)	AGAACGGCACCGTCAGAGGCAAGAA	LOC_Os06g51130
OsAffx.28205.1.S1_at--868--619	1	Chr06:30924743..30924767 (25 bp)	GAGGCAAGAAGGACGCCTCCACGGC	LOC_Os06g51130
OsAffx.28205.1.S1_at--566--269	1	Chr06:30924799..30924823 (25 bp)	AAGCTGAGAGCCATCGAGGCCGGCA	LOC_Os06g51130
OsAffx.28205.1.S1_at--1125--291	1	Chr06:30924994..30925018 (25 bp)	AAGGAGTGCGCGGTCTCGGTTCTTC	LOC_Os06g51130
OsAffx.28205.1.S1_at--242--923	1	Chr06:30925073..30925097 (25 bp)	TCCATGACCATCTGGCCGACATTGC	LOC_Os06g51130

Target Sequence

GGGCCATCCCCTTGATCATCGACGTGCTCAGGAACGGCAGCGTGGAGGGGCAGGAGAACTCCGCGGCGGCGCTCTTCAGC
CTGTCCATGGTGGACGAGAACAAGGTCGCCATTGGGACCCTGGGAGGCATACCTCCGCTGGTGGACCTCCTGCAGAACGG
CACCGTCAGAGGCAAGAAGGACGCCTCCACGGCCATCTTCAACCTCATGCTCAACAATGGCAACAAGCTGAGAGCCATCG
AGGCCGGCATCCTGCCCACGCTGCTCAAGCTGCTCGACGACAAGAAGGCCGCCATGGTCGACGAGGCGCTCTCCATCTTC
CTCCTGCTGGCCTCCAACCCTACGTGCCGGGGCGAGGTTGGGACGGAGCATTTCGTGGAGAAGCTGGTGCAGATCATCAA
GGAAGGGACTCCCAAGAACAAGGAGTGCGCGGTCTCGGTTCTTCTCGAGCTGGGCTCCAGCAACAACGCCCTCATGGCGC
ACGCCCTCGGCTTCGATCTCCATGACCATCTGGCCGACATTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis