Browse Element(s) Details


Os.156.2.S1_x_at

Description gb:D10425.1
DB_XREF= gi:218097
TID=Os.156.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for catalase, complete cds
DEF=Rice mRNA for catalase (273 gene), partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5115010/11Catalase isozyme B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51120OsAffx.5161.1.S1_at11/116+30919755..30920092hypothetical protein
LOC_Os06g51130OsAffx.28205.1.S1_at11/116+30923199..30925167U-box domain containing protein
LOC_Os06g51140Os.55440.1.S1_at11/116+30934756..30935614Zinc finger, C2H2 type family protein, expressed
LOC_Os06g51150Os.156.1.S1_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.1.A1_s_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.156.2.S1_x_at10/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.2.A1_x_at4/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51160Os.28351.1.A1_a_at2/116+30947621..30950472Glycosyltransferase QUASIMODO1, putative
LOC_Os06g51170Os.27283.1.S1_at11/116+30952103..30955666serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180OsAffx.5163.1.S1_at11/116+30956573..30964056hypothetical protein
LOC_Os06g51180OsAffx.16016.1.S1_at10/116+30956573..30964056hypothetical protein
LOC_Os06g51180Os.11300.2.S1_at1/116+30956573..30964056hypothetical protein
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042744biological_processhydrogen peroxide catabolism
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004096molecular_functioncatalase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.156.2.S1_x_at--313--6571Chr06:30943360..30943384 (25 bp)
GATTCTCATCTCTCCCACAACAAAT
LOC_Os06g51150
Os.156.2.S1_x_at--1070--2251Chr06:30943381..30943405 (25 bp)
AAATCACGCCATGGATCCCTACAAG
LOC_Os06g51150
Os.156.2.S1_x_at--908--2711Chr06:30943520..30943543 (24 bp)
AAGCATCGGCCGTCCAGCGGGAGCA
LOC_Os06g51150
Os.156.2.S1_x_at--797--1631Chr06:30943534..30943558 (25 bp)
AGCGGGAGCAATTCCACCTTCTGGA
LOC_Os06g51150
Os.156.2.S1_x_at--200--6011NONE
GAGAGCGAGGCCCTATCCTCCTTGA
NONE
Os.156.2.S1_x_at--299--9271Chr06:30944536..30944560 (25 bp)
TCCTCCTTGAGGACTATCATCTGAT
LOC_Os06g51150
Os.156.2.S1_x_at--166--6591Chr06:30944558..30944582 (25 bp)
GATTGAAAAGCTTGCACAGTTTGAC
LOC_Os06g51150
Os.156.2.S1_x_at--21--9031Chr06:30944570..30944594 (25 bp)
TGCACAGTTTGACAGGGAGCGTATC
LOC_Os06g51150
Os.156.2.S1_x_at--669--8071Chr06:30944585..30944609 (25 bp)
GGAGCGTATCCCTGAACGTGTCGTT
LOC_Os06g51150
Os.156.2.S1_x_at--788--5851Chr06:30944620..30944644 (25 bp)
GAGCCAGTGCCAAGGGATTTTTTGA
LOC_Os06g51150
Os.156.2.S1_x_at--966--6151Chr06:30944643..30944667 (25 bp)
GAGGTTACTCATGATATTTCTCACC
LOC_Os06g51150
Target Sequence 
GATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCT
GGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCCGCCCTCACCGTCGGAGAGCGAGGCCCTATCCTCCTTGAG
GACTATCATCTGATTGAAAAGCTTGCACAGTTTGACAGGGAGCGTATCCCTGAACGTGTCGTTCATGCAAGGGGAGCCAG
TGCCAAGGGATTTTTTGAGGTTACTCATGATATTTCTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.156.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis