Browse Element(s) Details


Os.39055.1.A1_s_at

Description gb:BU672915
DB_XREF= gi:23512941
DB_XREF=NL_8_22
CLONE=NL_8_22
TID=Os.39055.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39055 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5115011/11Catalase isozyme B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51120OsAffx.5161.1.S1_at11/116+30919755..30920092hypothetical protein
LOC_Os06g51130OsAffx.28205.1.S1_at11/116+30923199..30925167U-box domain containing protein
LOC_Os06g51140Os.55440.1.S1_at11/116+30934756..30935614Zinc finger, C2H2 type family protein, expressed
LOC_Os06g51150Os.156.1.S1_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.1.A1_s_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.156.2.S1_x_at10/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.2.A1_x_at4/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51160Os.28351.1.A1_a_at2/116+30947621..30950472Glycosyltransferase QUASIMODO1, putative
LOC_Os06g51170Os.27283.1.S1_at11/116+30952103..30955666serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180OsAffx.5163.1.S1_at11/116+30956573..30964056hypothetical protein
LOC_Os06g51180OsAffx.16016.1.S1_at10/116+30956573..30964056hypothetical protein
LOC_Os06g51180Os.11300.2.S1_at1/116+30956573..30964056hypothetical protein
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042744biological_processhydrogen peroxide catabolism
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004096molecular_functioncatalase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39055.1.A1_s_at--1084--8611Chr06:30946885..30946909 (25 bp)
TGGTGGTGCTATGTTGGACAGTCAA
LOC_Os06g51150
Os.39055.1.A1_s_at--318--5471Chr06:30946914..30946938 (25 bp)
GAACTGTAATGTGTCGACCAGCCGT
LOC_Os06g51150
Os.39055.1.A1_s_at--1096--3871Chr06:30946917..30946941 (25 bp)
CTGTAATGTGTCGACCAGCCGTAGT
LOC_Os06g51150
Os.39055.1.A1_s_at--722--7491Chr06:30947061..30947085 (25 bp)
GTGGGTGCTATATGTTTGAACTTGT
LOC_Os06g51150
Os.39055.1.A1_s_at--489--7711Chr06:30947063..30947087 (25 bp)
GGGTGCTATATGTTTGAACTTGTTT
LOC_Os06g51150
Os.39055.1.A1_s_at--152--5491Chr06:30947078..30947102 (25 bp)
GAACTTGTTTATACATCTGCCATCT
LOC_Os06g51150
Os.39055.1.A1_s_at--903--3611Chr06:30947081..30947105 (25 bp)
CTTGTTTATACATCTGCCATCTCTT
LOC_Os06g51150
Os.39055.1.A1_s_at--662--471Chr06:30947092..30947116 (25 bp)
ATCTGCCATCTCTTGTTTGCCTTTG
LOC_Os06g51150
Os.39055.1.A1_s_at--826--9191Chr06:30947095..30947119 (25 bp)
TGCCATCTCTTGTTTGCCTTTGTGT
LOC_Os06g51150
Os.39055.1.A1_s_at--579--3551Chr06:30947098..30947122 (25 bp)
CATCTCTTGTTTGCCTTTGTGTTAA
LOC_Os06g51150
Os.39055.1.A1_s_at--54--3631Chr06:30947103..30947127 (25 bp)
CTTGTTTGCCTTTGTGTTAAGATGG
LOC_Os06g51150
Target Sequence 
TGGTGGTGCTATGTTGGACAGTCAAACCATGAACTGTAATGTGTCGACCAGCCGTAGTTCGTGAATAAAATGTGATACCG
GTGATATGTATACCTGGTGACGCCCAGTTGTGAAACTGTATCTGGAATCCTGAAAATATCCCTTGCTGTGTCTTGGGAAA
GAGATAATAAAGACTGATACCGTGGGTGCTATATGTTTGAACTTGTTTATACATCTGCCATCTCTTGTTTGCCTTTGTGT
TAAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39055.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis