Browse Element(s) Details

Os.49835.1.S1_x_at

Description

gb:AK058839.1
DB_XREF= gi:32968857
TID=Os.49835.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-D09, full insert sequence.
FL= gb:AK058839.1 gb:AK112103.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51100	10/11	MAP kinase-activating protein C22orf5 homolog, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51050	Os.51172.1.S1_x_at	11/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51050	Os.2692.1.S1_x_at	8/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.22000.1.S1_at	11/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.51172.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.2692.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_x_at	9/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_at	8/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51084	Os.22169.2.S2_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S1_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S2_x_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S1_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.5160.1.S1_s_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S2_at	9/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.4.S1_x_at	7/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.19654.1.S1_at	1/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S2_x_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.2.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_x_at	10/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.26963.1.A1_at	1/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51110	Os.2693.2.S1_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51110	Os.2693.1.S1_x_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51120	OsAffx.5161.1.S1_at	11/11	6	+	30919755..30920092	hypothetical protein
LOC_Os06g51130	OsAffx.28205.1.S1_at	11/11	6	+	30923199..30925167	U-box domain containing protein
LOC_Os06g51140	Os.55440.1.S1_at	11/11	6	+	30934756..30935614	Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49835.1.S1_x_at--302--57	1	Chr06:30912395..30912419 (25 bp)	ATCCAAATCCAATCGCCGTCGTCGA	LOC_Os06g51100
Os.49835.1.S1_x_at--236--419	1	Chr06:30912345..30912369 (25 bp)	CCCTTTCAGCGCAAATCGTCGATTT	LOC_Os06g51100
Os.49835.1.S1_x_at--500--331	1	Chr06:30911919..30912228 (25 bp)	CACATCTCCCTCAAGCTACAAAAAA	LOC_Os06g51100
Os.49835.1.S1_x_at--437--991	1	Chr06:30911893..30911917 (25 bp)	TACTCAGGTTTCAGATCATTTTTCG	LOC_Os06g51100
Os.49835.1.S1_x_at--455--343	1	Chr06:30911882..30911906 (25 bp)	CAGATCATTTTTCGAGGTTGGAATT	LOC_Os06g51100
Os.49835.1.S1_x_at--1145--715	1	Chr06:30911818..30911842 (25 bp)	GTCTCATTCCTCAGCTTGCAGAGTC	LOC_Os06g51100
Os.49835.1.S1_x_at--681--1073	1	NONE	TTGCAGAGTCCAGTTCCAAGCAGTT	NONE
Os.49835.1.S1_x_at--92--345	1	Chr06:30909281..30909305 (25 bp)	CAGTTGAATACTACCGTGCATTTGG	LOC_Os06g51100
Os.49835.1.S1_x_at--824--143	1	Chr06:30909252..30909276 (25 bp)	AGAACATAATCCTACCTCTTGGTGT	LOC_Os06g51100
Os.49835.1.S1_x_at--726--361	1	Chr06:30909235..30909259 (25 bp)	CTTGGTGTCTGCCTCCTAATAAAGG	LOC_Os06g51100
Os.49835.1.S1_x_at--553--785	1	Chr06:30909130..30909154 (25 bp)	GGTAGCTCTAATAGTGGCGTACTTT	LOC_Os06g51100

Target Sequence

ATCCAAATCCAATCGCCGTCGTCGATCCCCTCAGCCCTGCTGCCGCCGCCCCCTTTCAGCGCAAATCGTCGATTTCCCCC
GCCTCCATCTCCCGCCGCTCGCCGCCGGGACCCCGCACCGCAAATCGTCGTCCTGCCTGCATCTTCGATTCCCTCCGCCG
CCCGTGGTTCCGCTCCTTAGCTGCCCATCTTCACATCTCCCTCAAGCTACAAAAAAATACTCAGGTTTCAGATCATTTTT
CGAGGTTGGAATTGCTGCAGGATCANGCGAAGCCTCGTCAGGCCATGCCCTCGTCTCATTCCTCAGCTTGCAGAGTCCAG
TTCCAAGCAGTTGAATACTACCGTGCATTTGGTGGAAGAACATAATCCTACCTCTTGGTGTCTGCCTCCTAATAAAGGAC
TCCAGTATCAGTTGGGGCTTGTGAATTATGATACTTTATGAACCATATTGTGAAACAGGAGGAGGCTGTCAATATATTGG
TAGCTCTAATAGTGGCGTACTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis