Browse Element(s) Details

OsAffx.16015.1.S1_at

Description

tigr:9634.m04965
TID=OsAffx.16015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NAM (no apical meristem)-like protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51070	8/11	No apical meristem protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51010	OsAffx.16014.1.S1_at	11/11	6	+	30868025..30868840	expressed protein
LOC_Os06g51029	Os.22474.1.S1_at	11/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.43567.1.S1_x_at	3/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.38172.1.S1_x_at	2/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.53217.1.S1_x_at	1/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51050	Os.51172.1.S1_x_at	11/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51050	Os.2692.1.S1_x_at	8/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.22000.1.S1_at	11/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.51172.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.2692.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_x_at	9/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_at	8/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51084	Os.22169.2.S2_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S1_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S2_x_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S1_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.5160.1.S1_s_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S2_at	9/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.4.S1_x_at	7/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.19654.1.S1_at	1/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S2_x_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.2.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_x_at	10/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.26963.1.A1_at	1/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51110	Os.2693.2.S1_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os06g51110	Os.2693.1.S1_x_at	11/11	6	+	30914127..30917864	G2/mitotic-specific cyclin 2, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0007275	biological_process	development
GO:0009611	biological_process	response to wounding
GO:0003700	molecular_function	transcription factor activity
GO:0016563	molecular_function	transcriptional activator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.16015.1.S1_at--458--537	1	NONE	GAAGACGCTCGTTTACTACGAGGGC	NONE
OsAffx.16015.1.S1_at--576--139	1	NONE	AGACGCTCGTTTACTACGAGGGCCG	NONE
OsAffx.16015.1.S1_at--342--479	1	NONE	GCTCGTTTACTACGAGGGCCGCGCC	NONE
OsAffx.16015.1.S1_at--793--9	1	Chr06:30893033..30893057 (25 bp)	ATTCCCGACACCATGCAATTGCAAA	LOC_Os06g51070
OsAffx.16015.1.S1_at--1159--925	1	Chr06:30893031..30893055 (25 bp)	TCCCGACACCATGCAATTGCAAATG	LOC_Os06g51070
OsAffx.16015.1.S1_at--1--7	1	Chr06:30893016..30893040 (25 bp)	ATTGCAAATGCAACACGACGACATG	LOC_Os06g51070
OsAffx.16015.1.S1_at--319--229	1	Chr06:30893011..30893035 (25 bp)	AAATGCAACACGACGACATGGTGCT	LOC_Os06g51070
OsAffx.16015.1.S1_at--686--991	1	Chr06:30892976..30893000 (25 bp)	TACCGGAAGGCGGTCTCCCTCAAGG	LOC_Os06g51070
OsAffx.16015.1.S1_at--241--471	1	Chr06:30892787..30892811 (25 bp)	GCGGCGCATGAGCTGGTCCGCCCGG	LOC_Os06g51070
OsAffx.16015.1.S1_at--198--413	1	Chr06:30892726..30892750 (25 bp)	CGCAGAGCGGGCTGGAGTGGATGCA	LOC_Os06g51070
OsAffx.16015.1.S1_at--313--809	1	Chr06:30892678..30892702 (25 bp)	GGAGCCCATGGATGGAGACCTGGTC	LOC_Os06g51070

Target Sequence

GAAGACGCTCGTTTACTACGAGGGCCGCGCCCCTCGCGGCACCAAGACCGACTGGGTCATGAACGAGTACCGCCTCCCCG
ACGCCGCCGCCATTCCCGACACCATGCAATTGCAAATGCAACACGACGACATGGTGCTCTGCAAGGTCTACCGGAAGGCG
GTCTCCCTCAAGGAGCTGGAGCAGAGGGTCGCCATGGAGGAGCTTGCACGCTCCACCACGTCCTCCGGCACCCACAACAC
CGGCTCGCCCCTGCAGCAGGACTCCTCCTCCATCTCCATCTCCTCCTCCTCGGACGCCATGAAGAAAGAGGTGGTGGGGG
TGGATGAGGCGTCGGCGGCGGCGCATGAGCTGGTCCGCCCGGCGACGCTGAGCCTGCCGCAGCTGGAGGTGGCGAGGCCG
CAGAGCGGGCTGGAGTGGATGCAGGAGCCATTCCTGACGCAGCTGCGGAGCCCATGGATGGAGACCTGGTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis