Browse Element(s) Details

OsAffx.16014.1.S1_at

Description

tigr:9634.m04960
TID=OsAffx.16014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51010	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50960	Os.47341.1.A1_at	11/11	6	+	30845362..30846881	Pollen allergen family protein, expressed
LOC_Os06g50970	OsAffx.28201.1.S1_s_at	11/11	6	+	30847400..30849740	expressed protein
LOC_Os06g50980	OsAffx.28202.1.S1_at	11/11	6	+	30854272..30855123	hypothetical protein
LOC_Os06g50990	OsAffx.28203.1.S1_at	10/11	6	+	30856610..30858465	hypothetical protein
LOC_Os06g51000	OsAffx.28204.1.S1_at	11/11	6	+	30865015..30866012	expressed protein
LOC_Os06g51010	OsAffx.16014.1.S1_at	11/11	6	+	30868025..30868840	expressed protein
LOC_Os06g51029	Os.22474.1.S1_at	11/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.43567.1.S1_x_at	3/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.38172.1.S1_x_at	2/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.53217.1.S1_x_at	1/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51050	Os.51172.1.S1_x_at	11/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51050	Os.2692.1.S1_x_at	8/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.22000.1.S1_at	11/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.51172.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.2692.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_x_at	9/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_at	8/11	6	+	30892524..30893525	No apical meristem protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.16014.1.S1_at--758--395	2	Chr06:30868495..30868519 (25 bp)	CGGAGCAACAGAGCTCGAGGTCGCC	LOC_Os06g51010
OsAffx.16014.1.S1_at--868--847	1	Chr06:30868554..30868578 (25 bp)	TGGCGTCCGCGTCCGTCTTCATGGA	LOC_Os06g51010
OsAffx.16014.1.S1_at--826--465	1	Chr06:30868562..30868586 (25 bp)	GCGTCCGTCTTCATGGAGGTCGCCT	LOC_Os06g51010
OsAffx.16014.1.S1_at--425--833	1	Chr06:30868618..30868642 (25 bp)	GGCTCCCGCCACGAAGAAGAGGCTG	LOC_Os06g51010
OsAffx.16014.1.S1_at--199--441	1	Chr06:30868625..30868649 (25 bp)	GCCACGAAGAAGAGGCTGCCGCCAT	LOC_Os06g51010
OsAffx.16014.1.S1_at--1138--537	1	Chr06:30868630..30868654 (25 bp)	GAAGAAGAGGCTGCCGCCATTGATG	LOC_Os06g51010
OsAffx.16014.1.S1_at--131--445	1	Chr06:30868645..30868669 (25 bp)	GCCATTGATGCACTCGTCGTCGAGG	LOC_Os06g51010
OsAffx.16014.1.S1_at--393--971	1	Chr06:30868728..30868752 (25 bp)	TCAAGCAGCTGGAGCAGTGCATCGG	LOC_Os06g51010
OsAffx.16014.1.S1_at--476--531	1	Chr06:30868774..30868798 (25 bp)	GAAGGTGTTCAGGAGTCTAATTCAG	LOC_Os06g51010
OsAffx.16014.1.S1_at--270--743	1	Chr06:30868778..30868802 (25 bp)	GTGTTCAGGAGTCTAATTCAGGCTA	LOC_Os06g51010
OsAffx.16014.1.S1_at--398--1	1	Chr06:30868784..30868808 (25 bp)	AGGAGTCTAATTCAGGCTAGGGTTT	LOC_Os06g51010

Target Sequence

CGGAGCAACAGAGCTCGAGGTCGCCAGGACGGTGGCCGAGGCCATCAACGACACCGCCGTGGCGTCCGCGTCCGTCTTCA
TGGAGGTCGCCTCCCTCGCCGACGCCGCGGCGGCTGCGGCCGCGGCTCCCGCCACGAAGAAGAGGCTGCCGCCATTGATG
CACTCGTCGTCGAGGAGCAAGAACAAGCAGGCGAGCTACGAGGAGAAGAGGGAGGCAATGGCGCTGGAGAAGCTCAAGCA
GCTGGAGCAGTGCATCGGGGAGCTGGAGAGCGAGAGCGAGAAGGTGTTCAGGAGTCTAATTCAGGCTAGGGTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis