Browse Element(s) Details


OsAffx.28202.1.S1_at

Description tigr:9634.m04957
TID=OsAffx.28202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5098011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50940Os.56682.1.S1_at11/116+30827275..30829400GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950Os.27247.1.S1_at11/116+30837055..30838936GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50960Os.47341.1.A1_at11/116+30845362..30846881Pollen allergen family protein, expressed
LOC_Os06g50970OsAffx.28201.1.S1_s_at11/116+30847400..30849740expressed protein
LOC_Os06g50980OsAffx.28202.1.S1_at11/116+30854272..30855123hypothetical protein
LOC_Os06g50990OsAffx.28203.1.S1_at10/116+30856610..30858465hypothetical protein
LOC_Os06g51000OsAffx.28204.1.S1_at11/116+30865015..30866012expressed protein
LOC_Os06g51010OsAffx.16014.1.S1_at11/116+30868025..30868840expressed protein
LOC_Os06g51029Os.22474.1.S1_at11/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.43567.1.S1_x_at3/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.38172.1.S1_x_at2/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.53217.1.S1_x_at1/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28202.1.S1_at--764--8251Chr06:30854605..30854629 (25 bp)
GGCAGCTTCCAGGAGACCGTCGTCG
LOC_Os06g50980
OsAffx.28202.1.S1_at--422--6151Chr06:30854809..30854833 (25 bp)
GAGGTGACCGGCCTGCTGATGGAGT
LOC_Os06g50980
OsAffx.28202.1.S1_at--934--9111Chr06:30854822..30854846 (25 bp)
TGCTGATGGAGTCGGCCGCGGTCAC
LOC_Os06g50980
OsAffx.28202.1.S1_at--110--4611Chr06:30854860..30854884 (25 bp)
GCGACGCTTTTCAACACCGTGGCGT
LOC_Os06g50980
OsAffx.28202.1.S1_at--687--4111Chr06:30854864..30854888 (25 bp)
CGCTTTTCAACACCGTGGCGTCCAT
LOC_Os06g50980
OsAffx.28202.1.S1_at--998--4031Chr06:30854936..30854960 (25 bp)
CGTTGGTGTGCCTGATCAAGAAGAC
LOC_Os06g50980
OsAffx.28202.1.S1_at--15--9191Chr06:30854944..30854968 (25 bp)
TGCCTGATCAAGAAGACGTCGGCGT
LOC_Os06g50980
OsAffx.28202.1.S1_at--598--4711Chr06:30855018..30855042 (25 bp)
GCTGGAGGAGTGCATCGATGAGCTC
LOC_Os06g50980
OsAffx.28202.1.S1_at--581--5071Chr06:30855050..30855074 (25 bp)
GCAGCGACAAGGTGTTCAGGAGCCT
LOC_Os06g50980
OsAffx.28202.1.S1_at--380--1051Chr06:30855059..30855083 (25 bp)
AGGTGTTCAGGAGCCTTGTGCAGAC
LOC_Os06g50980
OsAffx.28202.1.S1_at--482--6751Chr06:30855063..30855087 (25 bp)
GTTCAGGAGCCTTGTGCAGACCAGG
LOC_Os06g50980
Target Sequence 
GGCAGCTTCCAGGAGACCGTCGTCGCGCTCAAGCAGGACGTCGCCGAGGCCCTGGCCGCCATCCGCCGCCGCGACGGCGC
GCGCCTCGCCTCCGCGGTGCGCTCGCAGCGCAAGGCCGGGAAGGAGCTCGCCCGCCTCGCCGCCGCCGCGAGGGACGGCG
CCAGGCCGTCGCGCCTCGGGCTCGGCGGGAGCGCGGCGGAGGTGGAGGTGACCGGCCTGCTGATGGAGTCGGCCGCGGTC
ACCGCCGCCGCGTCCGCGACGCTTTTCAACACCGTGGCGTCCATGTCGGCGTCGGCTTCGGCGGCGGCGTGCTCTTGCCG
GAAGACGGCGGCGTTGGTGTGCCTGATCAAGAAGACGTCGGCGTCGTCGGAGGAGGAGAAGGAGACGATGGCGCTGGTGG
AGAGGCTGGAGGAGCTGGAGGAGTGCATCGATGAGCTCGACAACGGCAGCGACAAGGTGTTCAGGAGCCTTGTGCAGACC
AGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis