Browse Element(s) Details


OsAffx.28204.1.S1_at

Description tigr:9634.m04959
TID=OsAffx.28204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T23E18.17
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5100011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50960Os.47341.1.A1_at11/116+30845362..30846881Pollen allergen family protein, expressed
LOC_Os06g50970OsAffx.28201.1.S1_s_at11/116+30847400..30849740expressed protein
LOC_Os06g50980OsAffx.28202.1.S1_at11/116+30854272..30855123hypothetical protein
LOC_Os06g50990OsAffx.28203.1.S1_at10/116+30856610..30858465hypothetical protein
LOC_Os06g51000OsAffx.28204.1.S1_at11/116+30865015..30866012expressed protein
LOC_Os06g51010OsAffx.16014.1.S1_at11/116+30868025..30868840expressed protein
LOC_Os06g51029Os.22474.1.S1_at11/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.43567.1.S1_x_at3/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.38172.1.S1_x_at2/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.53217.1.S1_x_at1/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51050Os.51172.1.S1_x_at11/116+30886217..30887385Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51050Os.2692.1.S1_x_at8/116+30886217..30887385Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060Os.22000.1.S1_at11/116+30889767..30891053Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060Os.51172.1.S1_x_at2/116+30889767..30891053Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060Os.2692.1.S1_x_at2/116+30889767..30891053Basic endochitinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28204.1.S1_at--387--1391Chr06:30865580..30865604 (25 bp)
AGACCGAGATGACCGCCGCGCTCAT
LOC_Os06g51000
OsAffx.28204.1.S1_at--1120--4171Chr06:30865748..30865772 (25 bp)
CCCAGGTGGCCCTCGATCGGTTCGA
LOC_Os06g51000
OsAffx.28204.1.S1_at--118--4071Chr06:30865794..30865818 (25 bp)
CGAGTCCGAGAGCAGCTGCCACAAG
LOC_Os06g51000
OsAffx.28204.1.S1_at--522--7591Chr06:30865827..30865851 (25 bp)
GGGCATTCTTCACACAAGGGTTGCA
LOC_Os06g51000
OsAffx.28204.1.S1_at--964--3731Chr06:30865855..30865879 (25 bp)
CTCAACATTCAGACTCCAACATTCT
LOC_Os06g51000
OsAffx.28204.1.S1_at--636--4371Chr06:30865870..30865894 (25 bp)
CCAACATTCTAGAAACCAACTGAAA
LOC_Os06g51000
OsAffx.28204.1.S1_at--1126--5511Chr06:30865891..30865915 (25 bp)
GAAAATGTACATCTTGCTGACTGCT
LOC_Os06g51000
OsAffx.28204.1.S1_at--1012--7011Chr06:30865897..30865921 (25 bp)
GTACATCTTGCTGACTGCTCAGGAG
LOC_Os06g51000
OsAffx.28204.1.S1_at--446--4751Chr06:30865906..30865930 (25 bp)
GCTGACTGCTCAGGAGACGAACTAA
LOC_Os06g51000
OsAffx.28204.1.S1_at--1146--5771Chr06:30865921..30865945 (25 bp)
GACGAACTAATTGATCATGTACACA
LOC_Os06g51000
OsAffx.28204.1.S1_at--700--51Chr06:30865930..30865954 (25 bp)
ATTGATCATGTACACACTACATACA
LOC_Os06g51000
Target Sequence 
AGACCGAGATGACCGCCGCGCTCATGGACGCCGCCACCGCCAGCGCCGCCGCCTCCGCGGCCGTCTTCACCGCTGCCGCC
TCCATGTCGTCGGCCGCGGCCTCATCCTGCAGCTGCAAGAAGACGCCGGCGTTCGCGGCCTTCGCCAAGAAGGCCTCGCC
GGAGACGGCCCAGGTGGCCCTCGATCGGTTCGAGGAGTTGGAGCAATGCATCGACGAGTCCGAGAGCAGCTGCCACAAGG
TGTTCAGGGGCATTCTTCACACAAGGGTTGCACTGCTCAACATTCAGACTCCAACATTCTAGAAACCAACTGAAAATGTA
CATCTTGCTGACTGCTCAGGAGACGAACTAATTGATCATGTACACACTACATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis