Browse Element(s) Details


OsAffx.28201.1.S1_s_at

Description tigr:9634.m04956
TID=OsAffx.28201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BLE1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5097011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50930Os.11287.1.S1_at11/116+30822453..30824784Senescence-associated protein DIN1, putative, expressed
LOC_Os06g50940Os.56682.1.S1_at11/116+30827275..30829400GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950Os.27247.1.S1_at11/116+30837055..30838936GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50960Os.47341.1.A1_at11/116+30845362..30846881Pollen allergen family protein, expressed
LOC_Os06g50970OsAffx.28201.1.S1_s_at11/116+30847400..30849740expressed protein
LOC_Os06g50980OsAffx.28202.1.S1_at11/116+30854272..30855123hypothetical protein
LOC_Os06g50990OsAffx.28203.1.S1_at10/116+30856610..30858465hypothetical protein
LOC_Os06g51000OsAffx.28204.1.S1_at11/116+30865015..30866012expressed protein
LOC_Os06g51010OsAffx.16014.1.S1_at11/116+30868025..30868840expressed protein
LOC_Os06g51029Os.22474.1.S1_at11/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.43567.1.S1_x_at3/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.38172.1.S1_x_at2/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.53217.1.S1_x_at1/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28201.1.S1_s_at--573--8591Chr06:30848488..30848512 (25 bp)
TGGTCATGATGACCATTCTCATGGT
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--1098--2531Chr06:30849270..30849294 (25 bp)
AACTGCTTCTTAGTGGCCGAGGGAG
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--247--7551Chr06:30849282..30849306 (25 bp)
GTGGCCGAGGGAGACTCACTGCTTT
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--508--3751Chr06:30849296..30849320 (25 bp)
CTCACTGCTTTGGTTGTTGCAATGA
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--717--6651Chr06:30849311..30849335 (25 bp)
GTTGCAATGAAAGCCCTGAAGTTAA
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--562--6251Chr06:30849360..30849384 (25 bp)
GATGGGTTTTCATGTTGTTTTCAAC
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--725--10011Chr06:30849422..30849446 (25 bp)
TAGCTTCAATGGTGGAATGTGTGGC
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--290--3131Chr06:30849464..30849488 (25 bp)
AATTTCAGGATGATCACCAGCAGGA
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--838--7071Chr06:30849558..30849582 (25 bp)
GTAATTCACTCTTTTATGCACGCTG
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--894--651Chr06:30849573..30849597 (25 bp)
ATGCACGCTGTGAAAGTTGTATAAT
LOC_Os06g50970
OsAffx.28201.1.S1_s_at--647--6891Chr06:30849591..30849615 (25 bp)
GTATAATTCTGGGTTTGTAATCATT
LOC_Os06g50970
Target Sequence 
TGGTCATGATGACCATTCTCATGGTCATGGACACGAGCATGAGGGTTCATCGTCGCCTCATTAAACCAACTGCTTCTTAG
TGGCCGAGGGAGACTCACTGCTTTGGTTGTTGCAATGAAAGCCCTGAAGTTAATAAAGTACAATCTATTAAAACTAAGAT
GGGTTTTCATGTTGTTTTCAACTGTTTAATGCAAACTGGTTAAGTATTTGCTTTTGAGATAGCTTCAATGGTGGAATGTG
TGGCTGGAGAGGAATAAAAGAAATTTCAGGATGATCACCAGCAGGAAGAACGGGTGGTGGCCTTGGTGATTCAGAACATG
AATGAAAGAGTGTTTACGATTAATAATTTCATAGGGTAATTCACTCTTTTATGCACGCTGTGAAAGTTGTATAATTCTGG
GTTTGTAATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28201.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis