Browse Element(s) Details


Os.47341.1.A1_at

Description gb:AK072728.1
DB_XREF= gi:32982751
TID=Os.47341.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140D21, full insert sequence.
FL= gb:AK072728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5096011/11Pollen allergen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50920Os.53650.1.S1_at11/116+30816442..30822355protein kinase family protein, putative, expressed
LOC_Os06g50930Os.11287.1.S1_at11/116+30822453..30824784Senescence-associated protein DIN1, putative, expressed
LOC_Os06g50940Os.56682.1.S1_at11/116+30827275..30829400GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950Os.27247.1.S1_at11/116+30837055..30838936GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50960Os.47341.1.A1_at11/116+30845362..30846881Pollen allergen family protein, expressed
LOC_Os06g50970OsAffx.28201.1.S1_s_at11/116+30847400..30849740expressed protein
LOC_Os06g50980OsAffx.28202.1.S1_at11/116+30854272..30855123hypothetical protein
LOC_Os06g50990OsAffx.28203.1.S1_at10/116+30856610..30858465hypothetical protein
LOC_Os06g51000OsAffx.28204.1.S1_at11/116+30865015..30866012expressed protein
LOC_Os06g51010OsAffx.16014.1.S1_at11/116+30868025..30868840expressed protein
LOC_Os06g51029Os.22474.1.S1_at11/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.43567.1.S1_x_at3/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.38172.1.S1_x_at2/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029Os.53217.1.S1_x_at1/116+30869319..30876990Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47341.1.A1_at--655--9411Chr06:30846284..30846308 (25 bp)
TCGTCGTACTATTCGTCGTGGAGGT
LOC_Os06g50960
Os.47341.1.A1_at--101--1931Chr06:30846426..30846450 (25 bp)
ACGGTGAGGTGCTTCCCGCCGACTG
LOC_Os06g50960
Os.47341.1.A1_at--558--5911Chr06:30846563..30846587 (25 bp)
GAGCTCAGATGACAATTCGATCGAC
LOC_Os06g50960
Os.47341.1.A1_at--1086--2731Chr06:30846597..30846621 (25 bp)
AAGAAGGCGTCCTTATGCAGAGGCG
LOC_Os06g50960
Os.47341.1.A1_at--607--4611Chr06:30846653..30846677 (25 bp)
GCGAGAGGCTTGGTACGCCACTGCA
LOC_Os06g50960
Os.47341.1.A1_at--316--6131Chr06:30846709..30846733 (25 bp)
GAGGGAGTCAATACGCTTTGGAAGT
LOC_Os06g50960
Os.47341.1.A1_at--1129--1411Chr06:30846764..30846788 (25 bp)
AGAAACTGATAACCTCTCATCGCGG
LOC_Os06g50960
Os.47341.1.A1_at--906--3751Chr06:30846777..30846801 (25 bp)
CTCTCATCGCGGACCTGTGAAAAAA
LOC_Os06g50960
Os.47341.1.A1_at--848--2431Chr06:30846798..30846822 (25 bp)
AAAATGTAGCCACCCATCGGTAGCG
LOC_Os06g50960
Os.47341.1.A1_at--785--7831Chr06:30846816..30846840 (25 bp)
GGTAGCGCAGCAAACTTGGACCTTC
LOC_Os06g50960
Os.47341.1.A1_at--517--171Chr06:30846853..30846877 (25 bp)
ATTTTGCCATTCGACATGGCCACTT
LOC_Os06g50960
Target Sequence 
TCGTCGTACTATTCGTCGTGGAGGTACATGACGCGGCGCGACGGCGCGCCGGGAGTCTGGACGACGTCGCGCGCGCCGGT
CGGCCCGCTGCGGCTCCGCGTCGTGGTGACGGCCGGCTCCGGCGGGAAATGGCTGCGTAGCGACGGTGAGGTGCTTCCCG
CCGACTGGAGGCCCGGCGAGGTGTACGACACCGGCCTTCGGGTCACCGACGTCGCCGTGCGCTCGTGCAGCCTCTCCTGT
GCCATCCAGGACATGGACAGCGATGATNGANAGGAGGAAGAGCTCAGATGACAATTCGATCGACGTGATGAAGAAGAAGG
CGTCCTTATGCAGAGGCGTGGAGGATGGGATTAGNCGGCGGCGGCGNCGGCGAGAGGCTTGGTACGCCACTGCACCGGCG
ACGCGGATGGGAGGCGGCAGAGAAGGAGGGAGTCAATACGCTTTGGAAGTTACAAAGCCAGGGGCTTTTATGTAAAAGTG
AGAAACTGATAACCTCTCATCGCGGACCTGTGAAAAAATGTAGCCACCCATCGGTAGCGCAGCAAACTTGGACCTTCTTG
GAAAGGCAAATTTTGCCATTCGACATGGCCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47341.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis