Browse Element(s) Details

Os.22474.1.S1_at

Description

gb:AK065019.1
DB_XREF= gi:32975037
TID=Os.22474.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F19, full insert sequence.
FL= gb:AK061771.1 gb:AK065019.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51029	11/11	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50960	Os.47341.1.A1_at	11/11	6	+	30845362..30846881	Pollen allergen family protein, expressed
LOC_Os06g50970	OsAffx.28201.1.S1_s_at	11/11	6	+	30847400..30849740	expressed protein
LOC_Os06g50980	OsAffx.28202.1.S1_at	11/11	6	+	30854272..30855123	hypothetical protein
LOC_Os06g50990	OsAffx.28203.1.S1_at	10/11	6	+	30856610..30858465	hypothetical protein
LOC_Os06g51000	OsAffx.28204.1.S1_at	11/11	6	+	30865015..30866012	expressed protein
LOC_Os06g51010	OsAffx.16014.1.S1_at	11/11	6	+	30868025..30868840	expressed protein
LOC_Os06g51029	Os.22474.1.S1_at	11/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.43567.1.S1_x_at	3/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.38172.1.S1_x_at	2/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.53217.1.S1_x_at	1/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51050	Os.51172.1.S1_x_at	11/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51050	Os.2692.1.S1_x_at	8/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.22000.1.S1_at	11/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.51172.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.2692.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_x_at	9/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_at	8/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51084	Os.22169.2.S2_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S1_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S2_x_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S1_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.5160.1.S1_s_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S2_at	9/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.4.S1_x_at	7/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.19654.1.S1_at	1/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006510	biological_process	ATP-dependent proteolysis
GO:0010027	biological_process	thylakoid membrane organization and biogenesis
GO:0010205	biological_process	photoinhibition
GO:0010206	biological_process	photosystem II repair
GO:0009507	cellular_component	chloroplast
GO:0009535	cellular_component	thylakoid membrane (sensu Viridiplantae)
GO:0004176	molecular_function	ATP-dependent peptidase activity
GO:0008233	molecular_function	peptidase activity
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.22474.1.S1_at--487--815	1	Chr06:30874229..30874252 (24 bp)	GGAAATCCTTTCTTGGGCCAGCAGA	LOC_Os06g51029
Os.22474.1.S1_at--185--529	1	Chr06:30869753..30869777 (25 bp)	GAAGGCCTACTCAAGAGCAACGCAG	LOC_Os06g51029
Os.22474.1.S1_at--987--259	1	Chr06:30869735..30869759 (25 bp)	AACGCAGATCATCACGACACACATC	LOC_Os06g51029
Os.22474.1.S1_at--588--961	1	Chr06:30869637..30869661 (25 bp)	TCATCGACGGTCAGGCAGAGTTGTT	LOC_Os06g51029
Os.22474.1.S1_at--661--825	1	Chr06:30869624..30869648 (25 bp)	GGCAGAGTTGTTTGTCGCTTAATTG	LOC_Os06g51029
Os.22474.1.S1_at--265--317	1	Chr06:30869604..30869628 (25 bp)	AATTGCGTTGTATGTTCATCCCCTT	LOC_Os06g51029
Os.22474.1.S1_at--466--879	1	Chr06:30869592..30869616 (25 bp)	TGTTCATCCCCTTGGGTGAAATGGA	LOC_Os06g51029
Os.22474.1.S1_at--761--479	1	Chr06:30869413..30869437 (25 bp)	GCTCGCTGTACATCTGCACTGAAGA	LOC_Os06g51029
Os.22474.1.S1_at--686--537	1	Chr06:30869393..30869417 (25 bp)	GAAGACATGTCGCAGTTGCAGGCTT	LOC_Os06g51029
Os.22474.1.S1_at--1096--1073	1	Chr06:30869370..30869394 (25 bp)	TTGCAGCTATTTCATCCGTGTGGAC	LOC_Os06g51029
Os.22474.1.S1_at--757--303	1	Chr06:30869332..30869356 (25 bp)	AATCCAGATTTACTGATCGGCATCA	LOC_Os06g51029

Target Sequence

GGAAATCCTTTCTTGGGCCAGCAGATGTCGAGCCAGAAGGACTACTCGATGGCCACCNGCGGATGTTGTGGATGCTGAGG
TGAGGGAGCTCGTGGAGAAGGCCTACTCAAGAGCAACGCAGATCATCACGACACACATCGACATCCTCCACAAGCTTGCT
CAGCTTCTGATGGAGAAGGAGACGGTGGACGGGGAAGAGTTCATGAGCCTGTTCATCGACGGTCAGGCAGAGTTGTTTGT
CGCTTAATTGCGTTGTATGTTCATCCCCTTGGGTGAAATGGAGAAGGCGAATTTGTAGGAAGCACATCAATTTAGGCGAG
ATGTTTTTGCATATACTTGTATAGTTCATTGTAAAGAATGGCAAATACTGACATTGATCAAGTAAACANGTTGGTGCTTA
CGATTATAGCACCGCTAACTAAACATGATTCCNCTGTGCTCGCTGTACATCTGCACTGAAGACATGTCGCAGTTGCAGGC
TTGCAGCTATTTCATCCGTGTGGACTTTAATATGTTTGAATCCAGATTTACTGATCGGCATCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis