Browse Element(s) Details


Os.23648.1.S2_s_at

Description gb:CB096922
DB_XREF= gi:27921114
DB_XREF=AF53-Rpf_10_C04_T7_010.ab1
CLONE=C0003508
TID=Os.23648.1
CNT=14
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.23648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118C12, full insert sequence
FL= gb:AK073799.1 gb:AK099928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative
LOC_Os06g51220Os.12832.1.S1_a_at11/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220Os.14431.1.S1_x_at1/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230NANA6+30996881..31002886expressed protein
LOC_Os06g51240Os.23648.1.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240Os.23648.1.S2_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240OsAffx.28209.3.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51250Os.8291.1.A1_at11/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51250Os.8291.2.S1_at10/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51260Os.18955.1.S1_at11/116+31024947..31027986myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g51270OsAffx.28210.1.S1_at11/116+31032422..31047463callose synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23648.1.S2_s_at--996--6931Chr06:31008997..31009021 (25 bp)
GTAGTTGCCTATTTCGTTTAGTGCT
LOC_Os06g51240
Os.23648.1.S2_s_at--844--9391Chr06:31009010..31009034 (25 bp)
TCGTTTAGTGCTTTGGTCTCTTGAC
LOC_Os06g51240
Os.23648.1.S2_s_at--1000--7151Chr06:31009025..31009049 (25 bp)
GTCTCTTGACCAATATGGACCTAAT
LOC_Os06g51240
Os.23648.1.S2_s_at--171--7931Chr06:31009096..31009120 (25 bp)
GGATTGCCCTTCACTTTGATCATAG
LOC_Os06g51240
Os.23648.1.S2_s_at--588--10771Chr06:31009111..31009135 (25 bp)
TTGATCATAGCTTGTGGCTGACCTA
LOC_Os06g51240
Os.23648.1.S2_s_at--678--4931Chr06:31009120..31009144 (25 bp)
GCTTGTGGCTGACCTAACTTGGTTA
LOC_Os06g51240
Os.23648.1.S2_s_at--589--3131Chr06:31009144..31009168 (25 bp)
AATTTTGTCCACTCTTCATATCGAA
LOC_Os06g51240
Os.23648.1.S2_s_at--406--6411Chr06:31009199..31009223 (25 bp)
GATCTACCAGACAGTTTCTTCATTA
LOC_Os06g51240
Os.23648.1.S2_s_at--623--7871Chr06:31009235..31009259 (25 bp)
GGTTTCTAGATCTTTAGCCATGTAT
LOC_Os06g51240
Os.23648.1.S2_s_at--355--6551Chr06:31009299..31009323 (25 bp)
GATTATGCAACCTGCCAATTCCATT
LOC_Os06g51240
Os.23648.1.S2_s_at--898--5691Chr06:31009335..31009359 (25 bp)
GACTCTTTAACTGCTGACTGATCTC
LOC_Os06g51240
Target Sequence 
GTAGTTGCCTATTTCGTTTAGTGCTTTGGTCTCTTGACCAATATGGACCTAATGAAATTAATTACTTGTGAACAGAATTG
GAATTAGGTTCTATCAAAGGGATTGCCCTTCACTTTGATCATAGCTTGTGGCTGACCTAACTTGGTTAATTTTGTCCACT
CTTCATATCGAAAACACAACACTAAAGAAGTCACTAGTGAATGATCTACCAGACAGTTTCTTCATTAATAGCAATATTGG
TTTCTAGATCTTTAGCCATGTATGAGCATGGGGCATAATGGCAATGAAACTTGAAGGAGAGTGATTATGCAACCTGCCAA
TTCCATTCTTGAAATGTTGACTCTTTAACTGCTGACTGATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23648.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis