Browse Element(s) Details


Os.7931.1.S1_s_at

Description gb:AK070716.1
DB_XREF= gi:32980740
TID=Os.7931.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023057D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057D05, full insert sequence.
FL= gb:AK070716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5129011/11Phytoene synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51260Os.18955.1.S1_at11/116+31024947..31027986myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g51270OsAffx.28210.1.S1_at11/116+31032422..31047463callose synthase 1, putative, expressed
LOC_Os06g51280NANA6+31048805..31049630acetohydroxyacid synthase, putative
LOC_Os06g51290Os.7931.1.S1_s_at11/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290Os.7931.1.S1_a_at11/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290Os.37287.1.S1_at9/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51300NANA6+31062170..31062451hypothetical protein
LOC_Os06g51310Os.18590.1.S1_a_at11/116+31068078..31076380PINHEAD protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016117biological_processcarotenoid biosynthesis
GO:0016767molecular_functiongeranylgeranyl-diphosphate geranylgeranyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7931.1.S1_s_at--294--3191Chr06:31051432..31051456 (25 bp)
CAACTTCACAAAGAGGGCGTACGTT
LOC_Os06g51290
Os.7931.1.S1_s_at--446--2751Chr06:31051398..31051422 (25 bp)
AAGAAATTGCTAGCGCTTCCAGTTG
LOC_Os06g51290
Os.7931.1.S1_s_at--359--71Chr06:31051393..31051417 (25 bp)
ATTGCTAGCGCTTCCAGTTGCATAT
LOC_Os06g51290
Os.7931.1.S1_s_at--926--4571Chr06:31051386..31051410 (25 bp)
GCGCTTCCAGTTGCATATGGTAGAT
LOC_Os06g51290
Os.7931.1.S1_s_at--203--831Chr06:31051370..31051394 (25 bp)
ATGGTAGATCATTGCTGATGCCCTA
LOC_Os06g51290
Os.7931.1.S1_s_at--484--4751Chr06:31051357..31051381 (25 bp)
GCTGATGCCCTACTCACTGAGAAAT
LOC_Os06g51290
Os.7931.1.S1_s_at--1069--9891Chr06:31051347..31051371 (25 bp)
TACTCACTGAGAAATAGCCAGAAGT
LOC_Os06g51290
Os.7931.1.S1_s_at--993--2251Chr06:31051264..31051288 (25 bp)
AAATCAGACAGCATCTGCCTTCCGA
LOC_Os06g51290
Os.7931.1.S1_s_at--399--5011Chr06:31051166..31051190 (25 bp)
GCAGGCTAGGTGATGGTTGAATATT
LOC_Os06g51290
Os.7931.1.S1_s_at--50--3571Chr06:31051134..31051158 (25 bp)
CATCATGTATGTATATCCTTCCTTG
LOC_Os06g51290
Os.7931.1.S1_s_at--311--8771Chr06:31051129..31051153 (25 bp)
TGTATGTATATCCTTCCTTGATGCT
LOC_Os06g51290
Target Sequence 
CAACTTCACAAAGAGGGCGTACGTTGGGAAGGCGAAGAAATTGCTAGCGCTTCCAGTTGCATATGGTAGATCATTGCTGA
TGCCCTACTCACTGAGAAATAGCCAGAAGTAGGAGGCGGGAAGAGGAGATAAAGGGAAGATGATGAGCAGGTTAGGCTTA
GATAGGAAAAATCAGACAGCATCTGCCTTCCGATTAATGTTGAGGAAATTATATTATTGTGTGTATCATACATAGCATGT
ATAGGGAAAATGCTGCAGGCAGGCAGGCAGGCTAGGTGATGGTTGAATATTTCCTTCACATCATGTATGTATATCCTTCC
TTGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7931.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis