Browse Element(s) Details


Os.7931.1.S1_a_at

Description gb:AK070716.1
DB_XREF= gi:32980740
TID=Os.7931.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023057D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057D05, full insert sequence.
FL= gb:AK070716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5129011/11Phytoene synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51260Os.18955.1.S1_at11/116+31024947..31027986myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g51270OsAffx.28210.1.S1_at11/116+31032422..31047463callose synthase 1, putative, expressed
LOC_Os06g51280NANA6+31048805..31049630acetohydroxyacid synthase, putative
LOC_Os06g51290Os.7931.1.S1_s_at11/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290Os.7931.1.S1_a_at11/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290Os.37287.1.S1_at9/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51300NANA6+31062170..31062451hypothetical protein
LOC_Os06g51310Os.18590.1.S1_a_at11/116+31068078..31076380PINHEAD protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016117biological_processcarotenoid biosynthesis
GO:0016767molecular_functiongeranylgeranyl-diphosphate geranylgeranyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7931.1.S1_a_at--162--1631Chr06:31051506..31051643 (25 bp)
AGCCGGTGGCCGGTCTGGGCGTCTC
LOC_Os06g51290
Os.7931.1.S1_a_at--1123--4471Chr06:31051505..31051642 (25 bp)
GCCGGTGGCCGGTCTGGGCGTCTCT
LOC_Os06g51290
Os.7931.1.S1_a_at--691--8371Chr06:31051489..31051513 (25 bp)
GGCGTCTCTGTTGTTATACCGGCAA
LOC_Os06g51290
Os.7931.1.S1_a_at--1134--4631Chr06:31051488..31051512 (25 bp)
GCGTCTCTGTTGTTATACCGGCAAA
LOC_Os06g51290
Os.7931.1.S1_a_at--1154--4011Chr06:31051487..31051511 (25 bp)
CGTCTCTGTTGTTATACCGGCAAAT
LOC_Os06g51290
Os.7931.1.S1_a_at--644--7151Chr06:31051486..31051510 (25 bp)
GTCTCTGTTGTTATACCGGCAAATC
LOC_Os06g51290
Os.7931.1.S1_a_at--828--9511Chr06:31051485..31051509 (25 bp)
TCTCTGTTGTTATACCGGCAAATCC
LOC_Os06g51290
Os.7931.1.S1_a_at--250--3751Chr06:31051484..31051508 (25 bp)
CTCTGTTGTTATACCGGCAAATCCT
LOC_Os06g51290
Os.7931.1.S1_a_at--491--9471Chr06:31051483..31051507 (25 bp)
TCTGTTGTTATACCGGCAAATCCTT
LOC_Os06g51290
Os.7931.1.S1_a_at--1141--3851Chr06:31051482..31051506 (25 bp)
CTGTTGTTATACCGGCAAATCCTTG
LOC_Os06g51290
Os.7931.1.S1_a_at--401--6491Chr06:31051453..31051477 (25 bp)
GATAGAAGCAAACGATTACAACAAC
LOC_Os06g51290
Target Sequence 
AGCCGGTGGCCGGTCTGGGCGTCTCTGTTGTTATACCGGCAAATCCTTGACGAGATAGAAGCAAACGATTACAACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7931.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis