CREP Browser

Description

gb:AK059535.1
DB_XREF= gi:32969553
TID=Os.37287.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E01, full insert sequence.
FL= gb:AK059535.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51290	9/11	Phytoene synthase, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51260	Os.18955.1.S1_at	11/11	6	+	31024947..31027986	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g51270	OsAffx.28210.1.S1_at	11/11	6	+	31032422..31047463	callose synthase 1, putative, expressed
LOC_Os06g51280	NA	NA	6	+	31048805..31049630	acetohydroxyacid synthase, putative
LOC_Os06g51290	Os.7931.1.S1_s_at	11/11	6	+	31050985..31054928	Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290	Os.7931.1.S1_a_at	11/11	6	+	31050985..31054928	Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290	Os.37287.1.S1_at	9/11	6	+	31050985..31054928	Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51300	NA	NA	6	+	31062170..31062451	hypothetical protein
LOC_Os06g51310	Os.18590.1.S1_a_at	11/11	6	+	31068078..31076380	PINHEAD protein, putative, expressed

Gene Ontology Classification

GO id	Type	Name
GO:0016117	biological_process	carotenoid biosynthesis
GO:0016767	molecular_function	geranylgeranyl-diphosphate geranylgeranyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.37287.1.S1_at--492--655	1	Chr06:31051568..31051592 (25 bp)	GATTATTATTGTCGGTGCTTCTATG	LOC_Os06g51290
Os.37287.1.S1_at--297--17	1	Chr06:31051564..31051588 (25 bp)	ATTATTGTCGGTGCTTCTATGCCAT	LOC_Os06g51290
Os.37287.1.S1_at--1145--3	1	Chr06:31051561..31051585 (25 bp)	ATTGTCGGTGCTTCTATGCCATGGT	LOC_Os06g51290
Os.37287.1.S1_at--937--871	1	Chr06:31051559..31051583 (25 bp)	TGTCGGTGCTTCTATGCCATGGTGT	LOC_Os06g51290
Os.37287.1.S1_at--773--397	1	Chr06:31051556..31051580 (25 bp)	CGGTGCTTCTATGCCATGGTGTCAA	LOC_Os06g51290
Os.37287.1.S1_at--415--733	1	Chr06:31051554..31051578 (25 bp)	GTGCTTCTATGCCATGGTGTCAAAA	LOC_Os06g51290
Os.37287.1.S1_at--414--365	1	Chr06:31051551..31051575 (25 bp)	CTTCTATGCCATGGTGTCAAAAGGA	LOC_Os06g51290
Os.37287.1.S1_at--551--245	1	NONE	AAAATATCACTGCATTGCCCCGTTG	NONE
Os.37287.1.S1_at--157--25	1	NONE	ATATCACTGCATTGCCCCGTTGCAG	NONE
Os.37287.1.S1_at--92--907	1	Chr06:31051512..31051536 (25 bp)	TGCATTGCCCCGTTGCAGGTCTGGG	LOC_Os06g51290
Os.37287.1.S1_at--1126--419	1	Chr06:31051505..31051529 (25 bp)	CCCCGTTGCAGGTCTGGGCGTCTCT	LOC_Os06g51290

Target Sequence

GATTATTATTGTCGGTGCTTCTATGCCATGGTGTCAAAAGGAAAATAAAATATCACTGCATTGCCCCGTTGCAGGTCTGG
GCGTCTCT

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details