Browse Element(s) Details


Os.18590.1.S1_a_at

Description gb:AK122176.1
DB_XREF= gi:37991822
TID=Os.18590.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148L17, full insert sequence.
FL= gb:AK111500.1 gb:AK122176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5131011/11PINHEAD protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51270OsAffx.28210.1.S1_at11/116+31032422..31047463callose synthase 1, putative, expressed
LOC_Os06g51280NANA6+31048805..31049630acetohydroxyacid synthase, putative
LOC_Os06g51290Os.7931.1.S1_s_at11/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290Os.7931.1.S1_a_at11/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51290Os.37287.1.S1_at9/116+31050985..31054928Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os06g51300NANA6+31062170..31062451hypothetical protein
LOC_Os06g51310Os.18590.1.S1_a_at11/116+31068078..31076380PINHEAD protein, putative, expressed
LOC_Os06g51320Os.21805.1.S1_s_at11/116+31081748..31082643Gibberellin regulated protein, expressed
LOC_Os06g51330OsAffx.5164.1.S1_at1/116+31082617..31092279BNR/Asp-box repeat family protein, expressed
LOC_Os06g51340OsAffx.29536.5.S1_x_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51340OsAffx.28971.1.S1_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51350OsAffx.5165.1.S1_at11/116+31099115..31101230tRNA isopentenyltransferase 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18590.1.S1_a_at--29--2471Chr06:31075621..31075739 (25 bp)
AACAACCTCTGTTACACTTATGCGA
LOC_Os06g51310
Os.18590.1.S1_a_at--756--10131Chr06:31075733..31075757 (25 bp)
TATGCGAGGTGCACACGATCCGTAT
LOC_Os06g51310
Os.18590.1.S1_a_at--19--451Chr06:31075756..31075892 (25 bp)
ATCTATTGTTCCACCAGCATACTAT
LOC_Os06g51310
Os.18590.1.S1_a_at--263--1371Chr06:31075911..31075935 (25 bp)
AGAGCCCGTTTCTACATGGAGTCAG
LOC_Os06g51310
Os.18590.1.S1_a_at--891--3431Chr06:31075933..31075957 (25 bp)
CAGATAGCTCGGACAGTGGTTCAAT
LOC_Os06g51310
Os.18590.1.S1_a_at--681--10631Chr06:31076093..31076117 (25 bp)
TTCGCTTGGCTACTACTATCAGTTA
LOC_Os06g51310
Os.18590.1.S1_a_at--280--1211Chr06:31076113..31076137 (25 bp)
AGTTAGCCTTTAAATTGCCTCCCAT
LOC_Os06g51310
Os.18590.1.S1_a_at--82--4471Chr06:31076129..31076153 (25 bp)
GCCTCCCATTTGATTGCACTTAGTT
LOC_Os06g51310
Os.18590.1.S1_a_at--38--8651Chr06:31076227..31076251 (25 bp)
TGGGACACACCATTCTATTTCACAT
LOC_Os06g51310
Os.18590.1.S1_a_at--314--8751Chr06:31076256..31076280 (25 bp)
TGTAGACTCTATCCCACTATTTCAT
LOC_Os06g51310
Os.18590.1.S1_a_at--953--4191Chr06:31076295..31076319 (25 bp)
CCCTGGCTCTATTTGTACTCTAATT
LOC_Os06g51310
Target Sequence 
AACAACCTCTGTTACACTTATGCGAGGTGCACACGATCCGTATCTATTGTTCCACCAGCATACTATGCTCATCTGGCGGC
GTTCAGAGCCCGTTTCTACATGGAGTCAGATAGCTCGGACAGTGGTTCAATGGCGNGTGGTCGTGGAGGNGGTTCGTCTA
CATCGCGCAGCACTCGTGCTGCNGGTGGTGGAGCCGTCAGGCCCCTTCCTGCACTCAAGGACAGCGTCAAGAATGTCATG
TTCTACTGTTAGAATTCTACTANCTNCTTCGCTTGGCTACTACTATCAGTTAGCCTTTAAATTGCCTCCCATTTGATTGC
ACTTAGTTGTTCATCATGGGAAGCCTCAAATAAGAAGTATGCAAGACTTCTGAAGCCACATGCTATCATGTTGTGTGTTT
CTGGGACACACCATTCTATTTCACATTATCTGTAGACTCTATCCCACTATTTCATAAAAGCTGGGCTTCCCCTGGCTCTA
TTTGTACTCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18590.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis