Browse Element(s) Details


Os.18058.1.S1_x_at

Description gb:AK072375.1
DB_XREF= gi:32982398
TID=Os.18058.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065M01, full insert sequence.
FL= gb:AK072375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3941011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39360Os.3397.1.S1_at11/112+23753345..23754688B-box zinc finger family protein, expressed
LOC_Os02g39370NANA2+23755253..23760009Met-10, expressed
LOC_Os02g39380NANA2+23760736..23761566EF hand family protein, expressed
LOC_Os02g39390Os.51717.1.S1_at11/112+23763526..23766924expressed protein
LOC_Os02g39390OsAffx.25781.1.S1_at1/112+23763526..23766924expressed protein
LOC_Os02g39400Os.27355.1.A1_at11/112+23767238..23769792isochorismatase family protein, expressed
LOC_Os02g39410Os.18058.1.S1_x_at11/112+23770410..23776429Protein phosphatase 2C containing protein, expressed
LOC_Os02g39420Os.55732.1.S1_at4/112+23778892..23780064Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_s_at11/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.2.S1_x_at4/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_x_at1/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39440NANA2+23785790..23786943retrotransposon protein, putative, unclassified
LOC_Os02g39450NANA2+23789800..23790681hypothetical protein
LOC_Os02g39460OsAffx.30298.1.S1_x_at1/112+23796208..23796775hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18058.1.S1_x_at--303--731Chr02:23771344..23771368 (25 bp)
ATGTTGTTCAGTTTGTGCGTCAGGA
LOC_Os02g39410
Os.18058.1.S1_x_at--609--4931Chr02:23770836..23770860 (25 bp)
GCTTGTTGGTCATTGCTTGCACTCA
LOC_Os02g39410
Os.18058.1.S1_x_at--101--2291Chr02:23770812..23770836 (25 bp)
AAATGACAACGCGACTGCCATACTG
LOC_Os02g39410
Os.18058.1.S1_x_at--842--9671Chr02:23770780..23770804 (25 bp)
TCAAGCCCATTGAGGAGGACCCCGA
LOC_Os02g39410
Os.18058.1.S1_x_at--402--951Chr02:23770765..23770789 (25 bp)
AGGACCCCGATGAAGTTGCCAGTGC
LOC_Os02g39410
Os.18058.1.S1_x_at--1028--9751Chr02:23770673..23770697 (25 bp)
TAATCACTGGCCCTCCAATTTAGTG
LOC_Os02g39410
Os.18058.1.S1_x_at--269--7271Chr02:23770582..23770606 (25 bp)
GTCCAGAGAGTCCTATTTTTGTCCA
LOC_Os02g39410
Os.18058.1.S1_x_at--540--6911Chr02:23770524..23770548 (25 bp)
GTATGATGCCATCAGTCCATTAGCA
LOC_Os02g39410
Os.18058.1.S1_x_at--14--5991Chr02:23770496..23770520 (25 bp)
GAGACAGTCCGTTACATTTGTGCCT
LOC_Os02g39410
Os.18058.1.S1_x_at--42--6091Chr02:23770469..23770493 (25 bp)
GAGTCACTTGGATTCGTTTAACGCA
LOC_Os02g39410
Os.18058.1.S1_x_at--53--2611Chr02:23770450..23770474 (25 bp)
AACGCACCTTTATCATTGTACTCTG
LOC_Os02g39410
Target Sequence 
ATGTTGTTCAGTTTGTGCGTCAGGAATTACGTCCGGGGGAGGAAAATCTACGCGAGACTTGTGAGAAGCTTGTTGGTCAT
TGCTTGCACTCAAATGACAACGCGACTGCCATACTGGTTAAGTTCAAGCCCATTGAGGAGGACCCCGATGAAGTTGCCAG
TGCCAGGGATGAACATCAACACAACCCCGAGGGCGGTGATGAAAAACTTGACATCAACAATGACAATGACTAATCACTGG
CCCTCCAATTTAGTGCACCTTAGTTCTTGCAAGGATCTTAGCTAGCTGCAGGGAGTTTTGGGGTTAGATCAGGAAAAGAA
GGTCCAGAGAGTCCTATTTTTGTCCAAGGCGACGTTGATGGGATGCCACTAAGTACGTAGTATGATGCCATCAGTCCATT
AGCATAGGAGACAGTCCGTTACATTTGTGCCTGAGAGTCACTTGGATTCGTTTAACGCACCTTTATCATTGTACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18058.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis