Browse Element(s) Details


OsAffx.12410.1.S1_at

Description tigr:9630.m03785
TID=OsAffx.12410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3935010/11CDA02, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed
LOC_Os02g39310NANA2+23732381..23732650hypothetical protein
LOC_Os02g39320OsAffx.2915.1.S1_at11/112+23735968..23737061hypothetical protein
LOC_Os02g39330Os.11894.1.S1_at10/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330OsAffx.15866.1.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39330Os.36593.2.S1_x_at1/112+23737138..23738240Endochitinase PR4 precursor, putative, expressed
LOC_Os02g39340Os.33200.1.S1_at11/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39340OsAffx.28210.1.S1_at1/112+23739367..23743082glycine-rich protein, putative, expressed
LOC_Os02g39350Os.9176.1.S1_at11/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_x_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39350OsAffx.12410.1.S1_at10/112+23743279..23747294CDA02, putative, expressed
LOC_Os02g39360Os.3397.1.S1_at11/112+23753345..23754688B-box zinc finger family protein, expressed
LOC_Os02g39370NANA2+23755253..23760009Met-10, expressed
LOC_Os02g39380NANA2+23760736..23761566EF hand family protein, expressed
LOC_Os02g39390Os.51717.1.S1_at11/112+23763526..23766924expressed protein
LOC_Os02g39390OsAffx.25781.1.S1_at1/112+23763526..23766924expressed protein
LOC_Os02g39400Os.27355.1.A1_at11/112+23767238..23769792isochorismatase family protein, expressed
LOC_Os02g39410Os.18058.1.S1_x_at11/112+23770410..23776429Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003676molecular_functionnucleic acid binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12410.1.S1_at--1068--5471Chr02:23745627..23745651 (25 bp)
GAACTATTTAACAACTGATAGGGCC
LOC_Os02g39350
OsAffx.12410.1.S1_at--1043--171Chr02:23745622..23745646 (25 bp)
ATTTAACAACTGATAGGGCCTTTGA
LOC_Os02g39350
OsAffx.12410.1.S1_at--490--9791Chr02:23745619..23745643 (25 bp)
TAACAACTGATAGGGCCTTTGAAGG
LOC_Os02g39350
OsAffx.12410.1.S1_at--652--7551Chr02:23745607..23745631 (25 bp)
GGGCCTTTGAAGGAATTGTTCCTCT
LOC_Os02g39350
OsAffx.12410.1.S1_at--252--4451Chr02:23745605..23745629 (25 bp)
GCCTTTGAAGGAATTGTTCCTCTCA
LOC_Os02g39350
OsAffx.12410.1.S1_at--99--5311NONE
GAAGGAATTGTTCCTCTCAAAAAGA
NONE
OsAffx.12410.1.S1_at--24--10571Chr02:23744284..23744308 (25 bp)
TTCTTTACACTTTCTTATATTCCAT
LOC_Os02g39350
OsAffx.12410.1.S1_at--221--3671Chr02:23744227..23744295 (25 bp)
CTTATATTCCATGTTATTTCAGCAC
LOC_Os02g39350
OsAffx.12410.1.S1_at--1081--10191Chr02:23744225..23744293 (25 bp)
TATATTCCATGTTATTTCAGCACAG
LOC_Os02g39350
OsAffx.12410.1.S1_at--973--10211Chr02:23744223..23744291 (25 bp)
TATTCCATGTTATTTCAGCACAGGG
LOC_Os02g39350
OsAffx.12410.1.S1_at--52--10671Chr02:23744221..23744289 (25 bp)
TTCCATGTTATTTCAGCACAGGGTT
LOC_Os02g39350
Target Sequence 
GAACTATTTAACAACTGATAGGGCCTTTGAAGGAATTGTTCCTCTCAAAAAGAAATTGGTAGGAAAAACAAAGGCTGAAT
GTTCTGTTACGAGTGAATGGTCCCCTGATGGTCGCCATTTTATGACTGCTACAACAGCTCCGAGACTCCAAATAGACAAC
GGGATTAAAATATTTGACCACAATGGATCTCTGCAGTTCAAGAAGATGTTTGAAAAGCTGTATCAGGCTGACTGGAAGCC
AGAAGCGCCTGAAAAATTTAGTGACATTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAAC
AAGGTTCTTTACACTTTCTTATATTCCATGTTATTTCAGCACAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis