Browse Element(s) Details


OsAffx.25781.1.S1_at

Description tigr:9631.m05945
TID=OsAffx.25781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cinnamoyl-CoA reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g603804/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g393901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25781.1.S1_at--173--6492Chr03:34282149..34282173 (25 bp)
GATACCCATGCTCTGAAGTCTGAAA
LOC_Os03g60380
OsAffx.25781.1.S1_at--682--10531Chr03:34282252..34282276 (25 bp)
TTCAGTTCACTCTTTTTTGCCTCAT
LOC_Os03g60380
OsAffx.25781.1.S1_at--770--1551Chr03:34282314..34282338 (25 bp)
AGCTAAGCTACGACATTGGACCGAA
LOC_Os03g60380
OsAffx.25781.1.S1_at--631--6171Chr03:34282403..34282427 (25 bp)
GAGGAGATTGCACACACCACAATTT
LOC_Os03g60380
OsAffx.25781.1.S1_at--472--2071Chr03:34282475..34282499 (25 bp)
ACTTGTAGTGCTTGATGTGCTCCGC
NONE
OsAffx.25781.1.S1_at--669--9252Chr07:7413309..7413328 (20 bp)
TCCTGACGCATTTGCCGTGGAACCA
NONE
OsAffx.25781.1.S1_at--397--7531Chr03:34282530..34282554 (25 bp)
GTGGAACCACCGCTCACAGATGTCG
NONE
OsAffx.25781.1.S1_at--215--6371Chr03:34282560..34282584 (25 bp)
GATCCAGAACTCGTTCGCGTTGTAG
NONE
OsAffx.25781.1.S1_at--972--6631Chr03:34282578..34282602 (25 bp)
GTTGTAGAGGCCACCGCAAGTTCCG
NONE
OsAffx.25781.1.S1_at--800--5171Chr03:34282593..34282617 (25 bp)
GCAAGTTCCGCAGAATGTCTCGTTG
NONE
OsAffx.25781.1.S1_at--422--2991Chr03:34282606..34282630 (25 bp)
AATGTCTCGTTGTGTTCTTCGTCGT
NONE
Target Sequence 
GATACCCATGCTCTGAAGTCTGAAAAAACCCAAAGCACATCGGTGACAATGAAGAAAACATTTATAAAACAAAGCTAAAG
ATCGAATACGTTTTTCCCGTCTTTTCAGTTCACTCTTTTTTGCCTCATCTACCACACAGCACAATGTCTAGATGACTTCA
CATCTAGCTAAGCTACGACATTGGACCGAAGAACAGCTTCACCATCTTTTTTTTCCTAGTGGCAGGACAGATTGTCGTTT
GATCAGATTGGTCAGAGGAGATTGCACACACCACAATTTAACCTATAGCCTGGTTTTCTTGGAGGAGCTGCTGCTGCAGT
CAGGGCACTTGTAGTGCTTGATGTGCTCCGCCTTAGCCGGGGTTATCCTGACGCATTTGCCGTGGAACCACCGCTCACAG
ATGTCGCACCCGATCCAGAACTCGTTCGCGTTGTAGAGGCCACCGCAAGTTCCGCAGAATGTCTCGTTGTGTTCTTCGTC
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis