Browse Element(s) Details


Os.24712.1.A1_s_at

Description gb:AK058641.1
DB_XREF= gi:32968659
TID=Os.24712.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E01, full insert sequence.
FL= gb:AK058641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6038011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24712.1.A1_s_at--310--951Chr03:34280746..34280770 (25 bp)
AGGAACTGTCATGGGCCTGGTAATC
LOC_Os03g60380
Os.24712.1.A1_s_at--232--9771Chr03:34280766..34280790 (25 bp)
TAATCCCACCGACGATCAATGCTAG
LOC_Os03g60380
Os.24712.1.A1_s_at--1018--10011Chr03:34280788..34280812 (25 bp)
TAGCATGGCCATGCTTGTTCGCCTA
LOC_Os03g60380
Os.24712.1.A1_s_at--78--6711Chr03:34280804..34280826 (22 bp)
GTTCGCCTACTCGAAGGTTGCACAG
LOC_Os03g60380
Os.24712.1.A1_s_at--936--791Chr03:34281436..34281460 (25 bp)
ATGTGGAAGACGTTGCTCTTGCCCA
LOC_Os03g60380
Os.24712.1.A1_s_at--104--9591Chr03:34281452..34281476 (25 bp)
TCTTGCCCATATTCTGCTGTACGAG
LOC_Os03g60380
Os.24712.1.A1_s_at--424--1431Chr03:34281475..34281499 (25 bp)
AGAACCCATCTGCATCCGGGAGGCA
LOC_Os03g60380
Os.24712.1.A1_s_at--525--71Chr03:34281516..34281540 (25 bp)
ATTGCTCACTGGAGCGATTTCGCTT
LOC_Os03g60380
Os.24712.1.A1_s_at--740--6851Chr03:34281883..34281907 (25 bp)
GTTTGCAGTTCAGTCCCATGGAGAA
LOC_Os03g60380
Os.24712.1.A1_s_at--123--10551Chr03:34281948..34281972 (25 bp)
TTCATCTCTTGATCCTTCTATGCAT
LOC_Os03g60380
Os.24712.1.A1_s_at--1072--9051Chr03:34281968..34281992 (25 bp)
TGCATTAATCCTTCTGCCTGAGTAG
LOC_Os03g60380
Target Sequence 
AGGAACTGTCATGGGCCTGGTAATCCCACCGACGATCAATGCTAGCATGGCCATGCTTGTTCGCCTACTCGAAGGTTGCA
CAGAGGAGTATGCGGATTTTTACATGGGGCCAGTCCATGTGGAAGACGTTGCTCTTGCCCATATTCTGCTGTACGAGAAC
CCATCTGCATCCGGGAGGCACCTCTGCGTGCAGTCCATTGCTCACTGGAGCGATTTCGCTTCCANAGTCGCCGAGCTCTA
CCCCGANTACAAAGTGCCAAAATTACCCAAGGAAACGCAGCCTGGGCTGGTGAGAGCAGAGGCTGCGTCGAAGAAGCTGA
TCGCGCTGGGTTTGCAGTTCAGTCCCATGGAGAAGATCATCAGGGATTCAGTGGAAAGCCTCAAGAGCAGAGGCTTCATC
TCTTGATCCTTCTATGCATTAATCCTTCTGCCTGAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24712.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis