Browse Element(s) Details


Os.9436.1.S1_at

Description gb:AK103363.1
DB_XREF= gi:32988572
TID=Os.9436.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126N11, full insert sequence.
FL= gb:AK103363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6039011/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9436.1.S1_at--159--4691Chr03:34282579..34282603 (25 bp)
GCGGAACTTGCGGTGGCCTCTACAA
LOC_Os03g60390
Os.9436.1.S1_at--342--1591Chr03:34282433..34282457 (25 bp)
AGCTCCTCCAAGAAAACCAGGCTAT
LOC_Os03g60390
Os.9436.1.S1_at--535--8671Chr03:34282399..34282423 (25 bp)
TGTGGTGTGTGCAATCTCCTCTGAC
LOC_Os03g60390
Os.9436.1.S1_at--183--5611Chr03:34282360..34282384 (25 bp)
GACAATCTGTCCTGCCACTAGGAAA
LOC_Os03g60390
Os.9436.1.S1_at--553--9411Chr03:34282313..34282337 (25 bp)
TCGGTCCAATGTCGTAGCTTAGCTA
LOC_Os03g60390
Os.9436.1.S1_at--231--1171Chr03:34282281..34282305 (25 bp)
AGTCATCTAGACATTGTGCTGTGTG
LOC_Os03g60390
Os.9436.1.S1_at--266--2371Chr03:34282217..34282241 (25 bp)
AAACGTATTCGATCTTTAGCTTTGT
LOC_Os03g60390
Os.9436.1.S1_at--216--10391Chr03:34282182..34282206 (25 bp)
TTTTCTTCATTGTCACCGATGTGCT
LOC_Os03g60390
Os.9436.1.S1_at--1059--7311Chr03:34282162..34282186 (25 bp)
GTGCTTTGGGTTTTTTCAGACTTCA
LOC_Os03g60390
Os.9436.1.S1_at--1094--3411Chr03:34282146..34282170 (25 bp)
CAGACTTCAGAGCATGGGTATCGTT
LOC_Os03g60390
Os.9436.1.S1_at--335--211Chr03:34282089..34282113 (25 bp)
ATTTGTCAAGTGCTCAACAACTGGA
LOC_Os03g60390
Target Sequence 
GCGGAACTTGCGGTGGCCTCTACAACGCGAACGAGTTCTGGATCGGGTGCGACATCTGTGAGCGGTGGTTCCACGGCAAA
TGCGTCAGGATAACCCCGGCTAAGGCGGAGCACATCAAGCACTACAAGTGCCCTGACTGCAGCAGCAGCTCCTCCAAGAA
AACCAGGCTATAGGTTAAATTGTGGTGTGTGCAATCTCCTCTGACCAATCTGATCAAACGACAATCTGTCCTGCCACTAG
GAAAAAAAANGATGGTGAAGCTGTTCTTCGGTCCAATGTCGTAGCTTAGCTAGATGTGAAGTCATCTAGACATTGTGCTG
TGTGGTAGATGAGGCAANAAAGAGTGAACTGAAAAGACGGGAAAAACGTATTCGATCTTTAGCTTTGTTTTATAAATGTT
TTCTTCATTGTCACCGATGTGCTTTGGGTTTTTTCAGACTTCAGAGCATGGGTATCGTTGTTGNATTGTAGCTGCATGCA
TTGCATGATATATTTGTCAAGTGCTCAACAACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis