Browse Element(s) Details


Os.9075.1.S1_at

Description gb:AK102675.1
DB_XREF= gi:32987884
TID=Os.9075.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102D01, full insert sequence.
FL= gb:AK120081.1 gb:AK102675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6040011/1140S ribosomal protein S23, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9075.1.S1_at--877--3751Chr03:34286593..34286617 (25 bp)
CTCATCGCTGGGTTTGGTCGTAAGG
LOC_Os03g60400
Os.9075.1.S1_at--224--2111Chr03:34286567..34286591 (25 bp)
ACATGCTGTGGGAGACATTCCCGGT
LOC_Os03g60400
Os.9075.1.S1_at--532--5951Chr03:34286556..34286580 (25 bp)
GAGACATTCCCGGTGTCCGTTTCAA
LOC_Os03g60400
Os.9075.1.S1_at--438--9231Chr03:34286549..34286573 (25 bp)
TCCCGGTGTCCGTTTCAAGGTGGTG
LOC_Os03g60400
Os.9075.1.S1_at--892--1491Chr03:34286252..34286276 (25 bp)
AGCAGCGGATTTGGTTTCCTTCAGC
LOC_Os03g60400
Os.9075.1.S1_at--643--8551Chr03:34286241..34286265 (25 bp)
TGGTTTCCTTCAGCGCGATTTTAAA
LOC_Os03g60400
Os.9075.1.S1_at--13--4231Chr03:34286229..34286253 (25 bp)
GCGCGATTTTAAAATTCAAACCTGG
LOC_Os03g60400
Os.9075.1.S1_at--73--3291Chr03:34286213..34286237 (25 bp)
CAAACCTGGAATGTCGTGGAGTGAA
LOC_Os03g60400
Os.9075.1.S1_at--798--5171Chr03:34286159..34286183 (25 bp)
GCAAGTTGCAAGCAGCCTATTTTGT
LOC_Os03g60400
Os.9075.1.S1_at--459--10251Chr03:34286139..34286163 (25 bp)
TTTGTTGTTTTCTTGTGGCGCGGTT
LOC_Os03g60400
Os.9075.1.S1_at--744--3611Chr03:34286128..34286152 (25 bp)
CTTGTGGCGCGGTTTGAATCTTGAA
LOC_Os03g60400
Target Sequence 
CTCATCGCTGGGTTTGGTCGTAAGGGACATGCTGTGGGAGACATTCCCGGTGTCCGTTTCAAGGTGGTGAAGGTCTCCGG
CGTCTCTCTCCTCGCCCTCTTCAAGGAGAAGAAGGAGAAGCCAAGATCTTAAATCCTATTCCCCTCCATTGCAAGCAGCT
GGAGCGGCATGGCGGCTATAAGNAGTACAATTAGCTACATTCAGCTAATGAATTCTGGGGCCTTCCTTTTCTGCTTCTGG
CAGCTAATCTCTCTCTGAAATTCAGACTCGATGTTGTGGTGAACATGTCAATCGTATTTTTACCCCCCCTAATCACCTGA
ATTCAAATTCCATATAGAAGNAGCAGCGGATTTGGTTTCCTTCAGCGCGATTTTAAAATTCAAACCTGGAATGTCGTGGA
GTGAAGTAGTNTCATCATATGCTTGTGAATCTCNGCAAGTTGCAAGCAGCCTATTTTGTTGTTTTCTTGTGGCGCGGTTT
GAATCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis