Browse Element(s) Details


Os.16863.1.S1_x_at

Description gb:AK103889.1
DB_XREF= gi:32989098
TID=Os.16863.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150D12, full insert sequence.
FL= gb:AK103889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g603609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60340Os.35919.1.S1_s_at11/113+34250092..34253736expressed protein
LOC_Os03g60340Os.10095.1.S1_at11/113+34250092..34253736expressed protein
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16863.1.S1_x_at--1086--6231Chr03:34271228..34271252 (25 bp)
GATGGCAATCCTCATTACATGGCTC
LOC_Os03g60360
Os.16863.1.S1_x_at--883--9871Chr03:34271243..34271267 (25 bp)
TACATGGCTCCACCTGTTCATTATG
LOC_Os03g60360
Os.16863.1.S1_x_at--868--6911Chr03:34271272..34271296 (25 bp)
GTATGACAGCCAGCACACCAATGTG
LOC_Os03g60360
Os.16863.1.S1_x_at--1078--3411Chr03:34271315..34271339 (25 bp)
CAGGGTAGCTTTGACCTTGGGTGTA
LOC_Os03g60360
Os.16863.1.S1_x_at--653--7711Chr03:34271333..34271357 (25 bp)
GGGTGTAATCCTGGCATTTGTCAAT
LOC_Os03g60360
Os.16863.1.S1_x_at--735--8731Chr03:34271351..34271375 (25 bp)
TGTCAATGTAGTTGCTGGGTTCACC
LOC_Os03g60360
Os.16863.1.S1_x_at--324--6251Chr03:34271415..34271439 (25 bp)
GATGGATACACTGTTTTTCCCCTAT
LOC_Os03g60360
Os.16863.1.S1_x_at--429--5051Chr03:34271545..34271569 (25 bp)
GCAGCTCAGTCTTTTTAGTCAGGGA
LOC_Os03g60360
Os.16863.1.S1_x_at--658--1131Chr03:34271590..34271614 (25 bp)
AGTGCTGCAGCATTTTCCTTTGTAA
LOC_Os03g60360
Os.16863.1.S1_x_at--1091--2651Chr03:34271645..34271669 (25 bp)
AAGCCGTTCTCATGCATGATGCGTT
NONE
Os.16863.1.S1_x_at--428--711Chr03:34271660..34271684 (25 bp)
ATGATGCGTTACATTTTGTTTGCCT
NONE
Target Sequence 
GATGGCAATCCTCATTACATGGCTCCACCTGTTCATTATGCGCAGTATGACAGCCAGCACACCAATGTGCAAAGNTGAAT
GATGAGTCAGGGTAGCTTTGACCTTGGGTGTAATCCTGGCATTTGTCAATGTAGTTGCTGGGTTCACCNAATTTAAGGTT
ATCTGCAGGAATTCATTCCATGGAAGTGATGGATACACTGTTTTTCCCCTATCTTTTCATTAACCANGTTCCGGAATGCT
CGAGCCANGTTGCCTGAAGTCAAAATCTTTCTGCAAATTGTCGATGTATCNCCCTGATGAACCANTGGATTAGTGAGACC
GCAGCTCAGTCTTTTTAGTCAGGGATTGTGATTATTCGCAAATGTAGTGCTGCAGCATTTTCCTTTGTAAATATATAGTG
GATAATGGTCCNATGGTAACAAGCCGTTCTCATGCATGATGCGTTACATTTTGTTTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16863.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis