Browse Element(s) Details


Os.35919.1.S1_s_at

Description gb:AK065071.1
DB_XREF= gi:32975089
TID=Os.35919.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001K07, full insert sequence.
FL= gb:AK065071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6034011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60279OsAffx.13559.1.S1_at8/113+34222876..34227756Cinnamoyl-CoA reductase, putative
LOC_Os03g60300Os.57396.1.S1_at11/113+34228793..34231716expressed protein
LOC_Os03g60310OsAffx.3655.1.S1_at11/113+34237482..34239065hypothetical protein
LOC_Os03g60340Os.35919.1.S1_s_at11/113+34250092..34253736expressed protein
LOC_Os03g60340Os.10095.1.S1_at11/113+34250092..34253736expressed protein
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35919.1.S1_s_at--865--1831Chr03:34250740..34250764 (25 bp)
ACGCGGCGTCGTACTGCGGGAGCAC
LOC_Os03g60340
Os.35919.1.S1_s_at--369--4611Chr03:34250455..34250479 (25 bp)
GCGACGAGGCGATCTGACCTCATGA
LOC_Os03g60340
Os.35919.1.S1_s_at--39--6411Chr03:34250445..34250469 (25 bp)
GATCTGACCTCATGACGTCACGCCG
LOC_Os03g60340
Os.35919.1.S1_s_at--954--7091Chr03:34250397..34250421 (25 bp)
GTCACTAATCGGTGTAATCTGCTCC
LOC_Os03g60340
Os.35919.1.S1_s_at--648--191Chr03:34250363..34250387 (25 bp)
ATTTCTTTTCTTGGCGATCGATGTA
LOC_Os03g60340
Os.35919.1.S1_s_at--561--4631Chr03:34250350..34250374 (25 bp)
GCGATCGATGTAATCAAATCTCTCT
LOC_Os03g60340
Os.35919.1.S1_s_at--603--2271Chr03:34250335..34250359 (25 bp)
AAATCTCTCTATACTTGCTCCTCTT
LOC_Os03g60340
Os.35919.1.S1_s_at--337--3091Chr03:34250280..34250304 (25 bp)
AATACAGAAGCTAGCATTATTTGCT
LOC_Os03g60340
Os.35919.1.S1_s_at--1042--9051Chr03:34250259..34250283 (25 bp)
TGCTTGCATGTGTACAAAATCCACG
LOC_Os03g60340
Os.35919.1.S1_s_at--1010--3271Chr03:34250245..34250269 (25 bp)
CAAAATCCACGATCTTGCATCAAGA
LOC_Os03g60340
Os.35919.1.S1_s_at--84--2531Chr03:34250218..34250242 (25 bp)
AACTAATGTGATCACCAATTCAGGA
LOC_Os03g60340
Target Sequence 
ACGCGGCGTCGTACTGCGGGAGCACGAGCCGGCGGATGGTGCAGGTCGCCGGCGAGGTGCTNGGGGGCATCGCGGGTGCC
CGTCGGGGTGGTGAACGTCACCCGGATGTCGGAGCTNCNCNGCCGCNGACGCGCACACGCAGGTGTACAGGGAGCAGCGG
TGGGCGAAGCCGACGGCGGAGCAGCTCGCCGCCGACCCGAGGAGCTACGCCGACTGCACCCACTGGTGCCTCCCCGGCGT
CCCCGACGCGTGGAACGAGCTGCTCTACTGGAAGCTCTTCTTCCCCGCGCGCGACGAGGCGATCTGACCTCATGACGTCA
CGCCGCCGCCATCGTCGTCGTCGTCGTCGTCACTAATCGGTGTAATCTGCTCCGTTCCCGCCATTTCTTTTCTTGGCGAT
CGATGTAATCAAATCTCTCTATACTTGCTCCTCTTCTCTCCTCTTCTCTTTTTGAACGAAGTGAAAATACAGAAGCTAGC
ATTATTTGCTTGCATGTGTACAAAATCCACGATCTTGCATCAAGATTAACTAATGTGATCACCAATTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35919.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis