Browse Element(s) Details


Os.57396.1.S1_at

Description gb:AK111450.1
DB_XREF= gi:32996659
TID=Os.57396.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B10, full insert sequence.
FL= gb:AK111450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6030011/11expressed protein
LOC_Os03g559701/11ResB-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60240OsAffx.13558.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60240Os.52328.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60250OsAffx.3653.1.S1_at11/113+34206776..34207432expressed protein
LOC_Os03g60260Os.50583.1.S1_at9/113+34210295..34212001Transmembrane amino acid transporter protein, expressed
LOC_Os03g60279OsAffx.13559.1.S1_at8/113+34222876..34227756Cinnamoyl-CoA reductase, putative
LOC_Os03g60300Os.57396.1.S1_at11/113+34228793..34231716expressed protein
LOC_Os03g60310OsAffx.3655.1.S1_at11/113+34237482..34239065hypothetical protein
LOC_Os03g60340Os.35919.1.S1_s_at11/113+34250092..34253736expressed protein
LOC_Os03g60340Os.10095.1.S1_at11/113+34250092..34253736expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0017004biological_processcytochrome complex assembly
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57396.1.S1_at--775--5731Chr03:34229327..34229351 (25 bp)
GACTGGATGGAGTTCCACGTCGACC
LOC_Os03g60300
Os.57396.1.S1_at--653--3391Chr03:34229291..34229315 (25 bp)
CAGCTCTTCTTCATGACCATGTCGC
LOC_Os03g60300
Os.57396.1.S1_at--938--1752Chr05:29521667..29521691 (25 bp)
ACCTCCGCTCCGACGAGTGGGAGGA
NONE
Os.57396.1.S1_at--654--2211Chr03:34229156..34229180 (25 bp)
ACAAGCGGGACGGACATGGCGTTCG
LOC_Os03g60300
Os.57396.1.S1_at--290--4691Chr03:34229079..34229103 (25 bp)
GCGGCTGATCAACGTGACGCGGCTG
LOC_Os03g60300
Os.57396.1.S1_at--1013--3751Chr03:34228910..34228934 (25 bp)
CTCTACGCACACATCGTCTCATGAG
LOC_Os03g60300
Os.57396.1.S1_at--890--5111Chr03:34228904..34228928 (25 bp)
GCACACATCGTCTCATGAGCCATGA
LOC_Os03g60300
Os.57396.1.S1_at--1116--8911Chr03:34228889..34228913 (25 bp)
TGAGCCATGAGACCTCATATCGCAT
LOC_Os03g60300
Os.57396.1.S1_at--140--10392Chr03:34228846..34228870 (25 bp)
TTTTCTCTTCTTGTATGCTTTCAAA
LOC_Os03g60300
Os.57396.1.S1_at--58--7051Chr03:34228812..34228836 (25 bp)
GTAAATCCTCCAACAATTGATAAGT
LOC_Os03g60300
Os.57396.1.S1_at--391--6451Chr03:34228794..34228818 (25 bp)
GATAAGTATTCCGTCACTTTCAAAA
LOC_Os03g60300
Target Sequence 
GACTGGATGGAGTTCCACGTCGACCGCGCCCGCACCCAGCTCTTCTTCATGACCATGTCGCCGACGCACCTCCGCTCCGA
CGAGTGGGAGGACGCCGCCGCCGCCGCCGCCGGCGGAAACCACGGGTGCTACGGCGAGACGGAGCCGATCGCGGCGGAGG
AGTACAGGGGGACAAGCGGGACGGACATGGCGTTCGCGAGGGCGGTGGAGGCGGAGGCGCGGCGGCTCGGGGAGCGCAGC
GTGGCGGTGCGGCTGATCAACGTGACGCGGCTGTCGGAGCGGCGCAAGGACGCGCACCCGTCGGTGCACCGCCGGTACTG
GGACCCCGTCACCGACGAGCAGCGGCGCAACCCCAGCAGCTACGCCGACTGCATCCACTGGTGCCTCCCCGGCGTCCCCG
ACGTCTGGAACCAGCTCCTCTACGCACACATCGTCTCATGAGCCATGAGACCTCATATCGCATCTCCTTTTTGATATATT
TTTTTCTCTTCTTGTATGCTTTCAAAAAAACAAATGTAAATCCTCCAACAATTGATAAGTATTCCGTCACTTTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis