Browse Element(s) Details


OsAffx.3653.1.S1_at

Description tigr:9631.m05932
TID=OsAffx.3653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6025011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60210OsAffx.3652.1.S1_at11/113+34181098..34182353expressed protein
LOC_Os03g60220Os.53258.1.S1_at11/113+34184028..34185132expressed protein
LOC_Os03g60230OsAffx.19542.3.S1_x_at3/113+34187150..34191058retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g60240OsAffx.13558.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60240Os.52328.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60250OsAffx.3653.1.S1_at11/113+34206776..34207432expressed protein
LOC_Os03g60260Os.50583.1.S1_at9/113+34210295..34212001Transmembrane amino acid transporter protein, expressed
LOC_Os03g60279OsAffx.13559.1.S1_at8/113+34222876..34227756Cinnamoyl-CoA reductase, putative
LOC_Os03g60300Os.57396.1.S1_at11/113+34228793..34231716expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3653.1.S1_at--482--7211Chr03:34207336..34207360 (25 bp)
GTCGTCATGGCGTCCAACAAGCACG
LOC_Os03g60250
OsAffx.3653.1.S1_at--103--3491Chr03:34207297..34207321 (25 bp)
CAGGACTTCGACAACTACCCGGAAT
LOC_Os03g60250
OsAffx.3653.1.S1_at--896--2171Chr03:34207210..34207311 (25 bp)
ACAACTACCCGGAATACACCTACTG
LOC_Os03g60250
OsAffx.3653.1.S1_at--545--3951Chr03:34207201..34207302 (25 bp)
CGGAATACACCTACTGCCTCGGCAT
LOC_Os03g60250
OsAffx.3653.1.S1_at--209--7311Chr03:34207163..34207187 (25 bp)
GTGCTGTACACCACGGCGCAGGTCA
LOC_Os03g60250
OsAffx.3653.1.S1_at--137--3931Chr03:34207081..34207105 (25 bp)
CGGCCGTCGTTGACTTCGCCGGAGA
LOC_Os03g60250
OsAffx.3653.1.S1_at--1158--4151Chr03:34206956..34207089 (25 bp)
CGCCGGAGATCAGGTCGTCGCTTAC
LOC_Os03g60250
OsAffx.3653.1.S1_at--910--1031Chr03:34206945..34206969 (25 bp)
AGGTCGTCGCTTACCTGTTGATGTC
LOC_Os03g60250
OsAffx.3653.1.S1_at--484--10471Chr03:34206935..34206959 (25 bp)
TTACCTGTTGATGTCGGCGTTGTCG
LOC_Os03g60250
OsAffx.3653.1.S1_at--909--7371Chr03:34206898..34206922 (25 bp)
GTGACGGACTACATGCGTCAGGCCG
LOC_Os03g60250
OsAffx.3653.1.S1_at--911--2011Chr03:34206891..34206915 (25 bp)
ACTACATGCGTCAGGCCGCCGACAA
LOC_Os03g60250
Target Sequence 
GTCGTCATGGCGTCCAACAAGCACGGCCACGGCGGCGCCCAGGACTTCGACAACTACCCGGAATACACCTACTGCCTCGG
CATCTCGATCATCGCCGTGCTGTACACCACGGCGCAGGTCACGCGCGACGTTCACCGGCTCAGCTGGGGACGGGACGTCA
TCGCGGGGAGGAAGGCGGCGGCCGTCGTTGACTTCGCCGGAGATCAGGTCGTCGCTTACCTGTTGATGTCGGCGTTGTCG
GCGGCGGCGCCGGTGACGGACTACATGCGTCAGGCCGCCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis