Browse Element(s) Details


Os.50583.1.S1_at

Description gb:AK121940.1
DB_XREF= gi:37991563
TID=Os.50583.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107D18, full insert sequence.
FL= gb:AK121940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g602609/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60230OsAffx.19542.3.S1_x_at3/113+34187150..34191058retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g60240OsAffx.13558.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60240Os.52328.1.S1_x_at11/113+34196699..34205820WH2 motif family protein, expressed
LOC_Os03g60250OsAffx.3653.1.S1_at11/113+34206776..34207432expressed protein
LOC_Os03g60260Os.50583.1.S1_at9/113+34210295..34212001Transmembrane amino acid transporter protein, expressed
LOC_Os03g60279OsAffx.13559.1.S1_at8/113+34222876..34227756Cinnamoyl-CoA reductase, putative
LOC_Os03g60300Os.57396.1.S1_at11/113+34228793..34231716expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015171molecular_functionamino acid transporter activity
GO:0015173molecular_functionaromatic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50583.1.S1_at--57--9031NONE
TGCACCCGATCCACGAGATCGTGAA
NONE
Os.50583.1.S1_at--758--1871NONE
ACGAGATCGTGAAGGCCCGGCTGTT
NONE
Os.50583.1.S1_at--871--4691Chr03:34211715..34211739 (25 bp)
GCGGCTTCTTGCTCCTTGGGCTGGC
LOC_Os03g60260
Os.50583.1.S1_at--190--10631Chr03:34211741..34211765 (25 bp)
TTCGCGGCCCATGGGCTTTACACGG
LOC_Os03g60260
Os.50583.1.S1_at--29--9871Chr03:34211759..34211783 (25 bp)
TACACGGTTGTCTCGGGCCTCTGAA
LOC_Os03g60260
Os.50583.1.S1_at--593--5451Chr03:34211781..34211805 (25 bp)
GAACTGGGCCGTAATGGGCTCTCCT
LOC_Os03g60260
Os.50583.1.S1_at--1074--3391Chr03:34211827..34211851 (25 bp)
CAGCTTCTCTCTTCCAGTATATATT
LOC_Os03g60260
Os.50583.1.S1_at--393--10691Chr03:34211838..34211862 (25 bp)
TTCCAGTATATATTTTTCCAGACAT
LOC_Os03g60260
Os.50583.1.S1_at--525--10371Chr03:34211851..34211875 (25 bp)
TTTTCCAGACATTTTTCAAGACGTG
LOC_Os03g60260
Os.50583.1.S1_at--596--2991Chr03:34211879..34211903 (25 bp)
AATGTACTACACTAGATTAGCATAC
LOC_Os03g60260
Os.50583.1.S1_at--518--2351Chr03:34211933..34211957 (25 bp)
AAAGCGTTACATTTGCAGCTAATTT
LOC_Os03g60260
Target Sequence 
TGCACCCGATCCACGAGATCGTGAAGGCCCGGCTGTTCCCGTCGACGGACGGGTGGGCGCGGAAGCGCGCGNCGGTGCAG
GCGACCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGT
GGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCG
CGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCG
GGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTT
TCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAA
AAGCGTTACATTTGCAGCTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis